View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_26 (Length: 282)
Name: NF11849_high_26
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 7953624 - 7953422
Alignment:
| Q |
64 |
tttaagggattcatgagggaaaagggagagagaatatgaacgtataagattgttgaagaggagtaatgaagtaaggttgttgtgaaaagggtaatggtgg |
163 |
Q |
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| T |
7953624 |
tttaagggattcatgagggaaaagggagagagaatatgaacgtataaggttgttgaaaaggagtaatgaagtaaggttgttgtgaaaagggtaatggtgg |
7953525 |
T |
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| Q |
164 |
aagagtgaagaagtgatgatttgagagtgaagttgttggagaaaatggtaatgaggtgaagggttgttgagaagaagggacaggaagtgttgtgggtgct |
263 |
Q |
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| T |
7953524 |
aagagtgaagaagtgatgatttgagagtgaagttgttggagaaaatggtaatgaggtgaagggttgttgagaagaagggagaggaagtgttgtgggtgct |
7953425 |
T |
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| Q |
264 |
ttg |
266 |
Q |
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||| |
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| T |
7953424 |
ttg |
7953422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 266
Target Start/End: Complemental strand, 33005627 - 33005437
Alignment:
| Q |
76 |
atgagggaaaagggagagagaatatgaacgtataagattgttgaagaggagtaatgaagtaaggttgttgtgaaaagggtaatggtggaagagtgaagaa |
175 |
Q |
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|||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||| | |
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| T |
33005627 |
atgagggaaatacgagagtgaatatgaacgtataaggttgttgaagaagagtaatgaagtagaattgttgcgaaaagggtaatggtggaaaagtgaagta |
33005528 |
T |
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| Q |
176 |
gtgatgatttgagagtgaagttgttggagaaaatggtaatgaggtgaagggttgttgagaagaagggacaggaagtgttgtgggtgctttg |
266 |
Q |
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| T |
33005527 |
gtgatgatttgagagtgaagttgttgaagagaatggtaatgtggtaaagggttattgagaagaagggagaggaagtgttgtgggtactttg |
33005437 |
T |
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