View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_10 (Length: 438)
Name: NF11849_low_10
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 17703546 - 17703761
Alignment:
| Q |
14 |
gtagttggaaagacatttattggataaaagttaggtaatacgggcactacaaacagatgtgtattgaagctttatatcctcgtactaccaaacatgtaat |
113 |
Q |
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| T |
17703546 |
gtagttggaaagacatttattggataaaagttaggtaatacgggcactacaaacagatgtgtattgaagctttatatcctcatactaccaaacatgtaat |
17703645 |
T |
|
| Q |
114 |
atgtaactatgcttctgagtgaaggcttattgggtacctagcatgtgtttgacac-----------gacgctgatatatgtaattatattcaatcaatct |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||| |
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| T |
17703646 |
atgtaactatgcttgtgagtgaaggcttattgggtacctaacatgtgtttgacacgacactgacatgacgctgacatatgtaattatattcaattaatct |
17703745 |
T |
|
| Q |
203 |
attttattaaattgtt |
218 |
Q |
| |
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|||||||||||||||| |
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| T |
17703746 |
attttattaaattgtt |
17703761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 393
Target Start/End: Original strand, 17703796 - 17703914
Alignment:
| Q |
275 |
catgcacttcatatatttccatatgctactccaattatttctgaaaatttgctttattaggcactaatcgataatttcaaaaaccctaaacaaaatccaa |
374 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17703796 |
catgcacttcatagatttccatatgttactccaattatttctgaaaatttgctttattaggcactaatcgataatttcaaaaaccctaaacaaaatccaa |
17703895 |
T |
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| Q |
375 |
cgacaactactacaagtac |
393 |
Q |
| |
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| T |
17703896 |
cgacaactactacaagtac |
17703914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 17692484 - 17692598
Alignment:
| Q |
281 |
cttcatatatttccatatgctactccaattatttctgaaaatttgctttattaggcactaa-tcgataatttcaaaaaccctaaacaaaa-tccaacgac |
378 |
Q |
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| T |
17692484 |
cttcatagatttccataggatattccaaatatttctgaaaatttactttataaggcaccaattccatcatttcaaaaaccctaaacaaaattccaatgac |
17692583 |
T |
|
| Q |
379 |
aactactacaagtac |
393 |
Q |
| |
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||||||||||||||| |
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| T |
17692584 |
aactactacaagtac |
17692598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 393
Target Start/End: Original strand, 17685509 - 17685614
Alignment:
| Q |
289 |
atttccatatgctactccaattatttctgaaaatttgctttattaggcactaatc-gataatttcaaaaaccctaaacaaaatccaacgacaactactac |
387 |
Q |
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||||||||| | || ||||| |||||||||||||||||||| |||||||| ||| ||| |||||| ||||||||| ||||||||||||||||||||| | |
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| T |
17685509 |
atttccataagatattccaaatatttctgaaaatttgctttgttaggcaccaatttgatcatttcataaaccctaatcaaaatccaacgacaactactgc |
17685608 |
T |
|
| Q |
388 |
aagtac |
393 |
Q |
| |
|
|||||| |
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|
| T |
17685609 |
aagtac |
17685614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14626014 - 14625785
Alignment:
| Q |
1 |
agatcgtatttgagtagttggaaagacatttattggataaaagttaggtaatacgggcactacaaacagatgtgtattgaagctttatatcctcgtacta |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
14626014 |
agatcgtatt-gagtagttggaaagacatttattggataaaa-ttaggtaatacgggcactacaaacagatgtgtattgaagctttatattctcatacta |
14625917 |
T |
|
| Q |
101 |
ccaaacatgtaatatgtaactatgcttctgagtgaaggcttattgggtacctagcatgtgtttgacac-----------gacgctgatatatgtaattat |
189 |
Q |
| |
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| T |
14625916 |
ccaaacatgtaatatgtaactatgcttctgagtgaaggcttattggatacctaacatgtgtttgacacgacactgacatgacgctgacatatgtaattat |
14625817 |
T |
|
| Q |
190 |
attcaatcaatctattttattaaattgttact |
221 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |
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| T |
14625816 |
attcaatcaatttattttatcaaattgttact |
14625785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 275 - 393
Target Start/End: Complemental strand, 14625743 - 14625625
Alignment:
| Q |
275 |
catgcacttcatatatttccatatgctactccaattatttctgaaaatttgctttattaggcactaatcgataatttcaaaaaccctaaacaaaatccaa |
374 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14625743 |
catgcacttcatagatttccatatgttactccaattatttctgaaaatttgctttattaggcactgatcgataatttcaaaaaccctaaacaaaatccaa |
14625644 |
T |
|
| Q |
375 |
cgacaactactacaagtac |
393 |
Q |
| |
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|||||||||||||||||| |
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| T |
14625643 |
tgacaactactacaagtac |
14625625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 393
Target Start/End: Complemental strand, 14659662 - 14659557
Alignment:
| Q |
289 |
atttccatatgctactccaattatttctgaaaatttgctttattaggcactaatc-gataatttcaaaaaccctaaacaaaatccaacgacaactactac |
387 |
Q |
| |
|
||||||||| | || ||||| |||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||| | |
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| T |
14659662 |
atttccataagatattccaaatatttctgaaaatttgctttgttaggcaccaatttgatcatttcaaaaaccctaaacaaaacccaacgacaactactgc |
14659563 |
T |
|
| Q |
388 |
aagtac |
393 |
Q |
| |
|
|||||| |
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|
| T |
14659562 |
aagtac |
14659557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 14651251 - 14651160
Alignment:
| Q |
304 |
tccaattatttctgaaaatttgctttattaggcactaat-cgataatttcaaaaaccctaaacaaaa-tccaacgacaactactacaagtac |
393 |
Q |
| |
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||||| ||||||||||||||| |||||| |||||| ||| | || |||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
14651251 |
tccaaatatttctgaaaatttactttataaggcaccaattccatcatttcaaaaaccctaaacaaaattccaatgacaactactacaagtac |
14651160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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