View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11849_low_11 (Length: 438)

Name: NF11849_low_11
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11849_low_11
NF11849_low_11
[»] chr3 (9 HSPs)
chr3 (283-419)||(50742802-50742938)
chr3 (1-191)||(50743527-50743717)
chr3 (69-181)||(52009230-52009342)
chr3 (99-175)||(502406-502482)
chr3 (97-179)||(41457508-41457590)
chr3 (97-146)||(23151570-23151619)
chr3 (110-179)||(35512548-35512617)
chr3 (90-139)||(37125947-37125996)
chr3 (97-146)||(38253262-38253311)
[»] chr6 (1 HSPs)
chr6 (67-179)||(2560320-2560431)
[»] chr8 (3 HSPs)
chr8 (92-173)||(27225600-27225681)
chr8 (97-146)||(32834892-32834941)
chr8 (135-179)||(41873580-41873624)
[»] chr7 (3 HSPs)
chr7 (75-177)||(39494975-39495077)
chr7 (97-146)||(47019892-47019941)
chr7 (97-145)||(25105893-25105941)
[»] chr5 (2 HSPs)
chr5 (109-179)||(8935148-8935218)
chr5 (100-150)||(8336140-8336190)
[»] chr1 (5 HSPs)
chr1 (67-156)||(8970428-8970515)
chr1 (100-149)||(6979420-6979469)
chr1 (97-150)||(15475309-15475362)
chr1 (97-146)||(44053980-44054029)
chr1 (97-150)||(48541931-48541984)
[»] chr4 (6 HSPs)
chr4 (115-179)||(31445440-31445504)
chr4 (100-179)||(44878992-44879071)
chr4 (113-179)||(23114498-23114564)
chr4 (92-146)||(36224474-36224528)
chr4 (92-140)||(3874928-3874976)
chr4 (82-118)||(6508836-6508872)
[»] chr2 (4 HSPs)
chr2 (111-175)||(9728800-9728864)
chr2 (92-167)||(14286621-14286696)
chr2 (125-176)||(18377237-18377288)
chr2 (97-146)||(31546624-31546673)
[»] scaffold0562 (1 HSPs)
scaffold0562 (92-140)||(5747-5795)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 283 - 419
Target Start/End: Complemental strand, 50742938 - 50742802
Alignment:
Q  283 tgttatttctcaattattttatgggtcgaaggacgaacatgtgaacaaatgatagccaaactgtgcagataggtgatactgataagtgcatagcacaata 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50742938 tgttatttctcaattattttatgggtcgaaggacgaacatgtgaacaaatgatagccaaactgtgcagataggtgatactgataagtgcatagcacaata 50742839  T
Q  383 tgtgttgttattttatttatatatgtcctatcactat 419  Q
    |||||||||||||||||||||||||||||||||||||    
T  50742838 tgtgttgttattttatttatatatgtcctatcactat 50742802  T

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Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 50743717 - 50743527
Alignment:
Q  1 aagacgtgattggcttctttctaagtttgaggggatacgtgaactttttcgtttgaagagaacacataaattgtgttttgtgggttttgaattgaattga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || ||||| | |||||| ||||||||||||||||||||||    
T  50743717 aagacgtgattggcttctttctgagtttgaggggatacgtgaacttttttgtttgaagataatacatagactgtgttgtgtgggttttgaattgaattga 50743618  T
Q  101 aatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgag-tgtgagtagtatctgtcgtagatttatag 191  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||||| |||| ||||||||| | ||||||||||||    
T  50743617 aatttttattttaattaaagggtgtattagtaattttgggatgtaacttagatta-tttgagatgtgggtagtatctcttgtagatttatag 50743527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 52009342 - 52009230
Alignment:
Q  69 aattgtgttttgtgggttttgaattgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgag 168  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||  ||||| ||||||||||| | | ||||     
T  52009342 aattgtgttttgtgggttttgaattaaattgaagtttttattttaattaaagggtatattagtaattttggtgtgtaacttggattatttggggagtgaa 52009243  T
Q  169 tagtatctgtcgt 181  Q
    |||||| ||||||    
T  52009242 tagtatatgtcgt 52009230  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 502406 - 502482
Alignment:
Q  99 gaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatc 175  Q
    ||||||||||||||||||||||| | |||| |||||||| || || || ||||||||||| | ||||||||||||||    
T  502406 gaaatttttattttaattaaagggtttattggtaattttagggtgaaacttggattatttggggtgtgagtagtatc 502482  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 41457508 - 41457590
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |||| ||||| |||  || ||| | ||||||||||||| ||||    
T  41457508 ttgaaatttttattttagttaaaggatatattagtcattatggggtgtaacttgtgttttttggggtgtgagtagtatgtgtc 41457590  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 23151570 - 23151619
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||| |||||    
T  23151570 ttgaaatttttattttaattaaagggtatattagtcattctggggtgtaa 23151619  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 35512617 - 35512548
Alignment:
Q  110 tttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    |||| ||||||||| ||||||| ||| |||| ||||| |||| || ||| ||||||||||||||| ||||    
T  35512617 tttagttaaaggatatattagtcattatggggtgtaacttgggttttttggagtgtgagtagtatatgtc 35512548  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 37125996 - 37125947
Alignment:
Q  90 aattgaattgaaatttttattttaattaaaggatgtattagtaattttgg 139  Q
    |||||| ||||||||||||||||| ||||||| | ||||||| |||||||    
T  37125996 aattgatttgaaatttttattttagttaaagggtatattagtcattttgg 37125947  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 38253262 - 38253311
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    ||||||||||||||||| ||||||| | ||||||| |||||||| |||||    
T  38253262 ttgaaatttttattttatttaaagggtatattagtcattttggggtgtaa 38253311  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 2560320 - 2560431
Alignment:
Q  67 taaattgtgttttgtgggttttgaattgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtg 166  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||| ||||||| ||||| ||||||||||| | |||||    
T  2560320 taaatcgtgttttgtgggttttaaattggattgaaatttttattttaattaaagggtatattagtatttttggggtgtaacttggattatttagggtgtg 2560419  T
Q  167 agtagtatctgtc 179  Q
     ||||||||||||    
T  2560420 -gtagtatctgtc 2560431  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 27225600 - 27225681
Alignment:
Q  92 ttgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagta 173  Q
    |||||||||||||||||||||||||||| | | ||||| |||||||||||| ||| ||||||||||| | ||||| ||||||    
T  27225600 ttgaattgaaatttttattttaattaaaaggtatattaataattttgggatataacttggattatttcgggtgtgggtagta 27225681  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 32834892 - 32834941
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    ||||||||||||||||| ||||||| | ||||||| ||| ||||||||||    
T  32834892 ttgaaatttttattttagttaaagggtatattagtcattctgggatgtaa 32834941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 41873580 - 41873624
Alignment:
Q  135 tttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    |||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  41873580 tttggggtgtaacttggattatttggagtgtgagtagtatttgtc 41873624  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 39494975 - 39495077
Alignment:
Q  75 gttttgtgggttttgaattgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtat 174  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||| | | ||||| |||||||||  ||||| || ||||||||   ||||| |||||||    
T  39494975 gttttctgggttttaaattggattgaaatttttattttaattaaatggtatattaataattttggagtgtaacttagattatttgaggtgtgggtagtat 39495074  T
Q  175 ctg 177  Q
    |||    
T  39495075 ctg 39495077  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 47019941 - 47019892
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |||| |||||    
T  47019941 ttgaaatttttattttagttaaaggatatattagtcattctggggtgtaa 47019892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 25105893 - 25105941
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgta 145  Q
    ||||||||||||||||| ||||||| | ||||||| |||||||| ||||    
T  25105893 ttgaaatttttattttagttaaagggtatattagtcattttggggtgta 25105941  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 8935218 - 8935148
Alignment:
Q  109 ttttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||||||||  ||||  |||||||||||    
T  8935218 ttttaattaaagggtatattagtaagtttggggtgtaatttggattattttggatgtggatagtatctgtc 8935148  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 8336140 - 8336190
Alignment:
Q  100 aaatttttattttaattaaaggatgtattagtaattttgggatgtaatttg 150  Q
    |||||||||||||| ||||||| | ||||||| ||| ||||||||||||||    
T  8336140 aaatttttattttagttaaagggtatattagtcattatgggatgtaatttg 8336190  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 8970428 - 8970515
Alignment:
Q  67 taaattgtgttttgtgggttttgaattgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattat 156  Q
    |||| ||||||||||||||||||||||| || |||| || |||||||||| |||| | || ||||||||||| ||||||| |||||||||    
T  8970428 taaactgtgttttgtgggttttgaattggatcgaaaattgtattttaatt-aagggtata-tagtaattttgtgatgtaacttggattat 8970515  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 6979420 - 6979469
Alignment:
Q  100 aaatttttattttaattaaaggatgtattagtaattttgggatgtaattt 149  Q
    |||||||||||||| ||||||| | ||||||| |||||||| ||||||||    
T  6979420 aaatttttattttagttaaagggtatattagtcattttggggtgtaattt 6979469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 15475362 - 15475309
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttg 150  Q
    ||||||||||||||||| ||||||| | ||||||| ||| |||| |||||||||    
T  15475362 ttgaaatttttattttagttaaagggtatattagtcattctggggtgtaatttg 15475309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 44054029 - 44053980
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    ||||||||||||||||||||||||| | ||||||| ||||| || |||||    
T  44054029 ttgaaatttttattttaattaaagggtatattagtcattttagggtgtaa 44053980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 48541984 - 48541931
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttg 150  Q
    ||||||||||||||||| ||||||| | ||||||| ||| |||| |||||||||    
T  48541984 ttgaaatttttattttagttaaagggtatattagtcattctggggtgtaatttg 48541931  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 31445440 - 31445504
Alignment:
Q  115 ttaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    ||||||| | ||||||| |||||||| ||||||||||||| ||  | ||||||||||||||||||    
T  31445440 ttaaagggtatattagtcattttggggtgtaatttggatttttcggggtgtgagtagtatctgtc 31445504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 44878992 - 44879071
Alignment:
Q  100 aaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    |||||||||||||| ||||||| | ||||||| ||| ||| |||||| |||  || ||| | ||||||||||||||||||    
T  44878992 aaatttttattttagttaaagggtatattagtcattatggaatgtaacttgtgttttttggggtgtgagtagtatctgtc 44879071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 23114564 - 23114498
Alignment:
Q  113 aattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatctgtc 179  Q
    ||||||||||| ||||  |||||||||| ||||| ||| ||| ||| | ||||||||||||||||||    
T  23114564 aattaaaggatatattgataattttggggtgtaacttgaattttttggggtgtgagtagtatctgtc 23114498  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 36224528 - 36224474
Alignment:
Q  92 ttgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    |||| ||||||||||||||||| ||||||| | ||||||| ||| ||||||||||    
T  36224528 ttgatttgaaatttttattttagttaaagggtatattagtcattctgggatgtaa 36224474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 3874976 - 3874928
Alignment:
Q  92 ttgaattgaaatttttattttaattaaaggatgtattagtaattttggg 140  Q
    |||| ||||||||||||||||| ||||||||| ||||||| ||| ||||    
T  3874976 ttgatttgaaatttttattttagttaaaggatatattagtcattctggg 3874928  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 6508872 - 6508836
Alignment:
Q  82 gggttttgaattgaattgaaatttttattttaattaa 118  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  6508872 gggttttgaattaaattgaaatttttatttaaattaa 6508836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 9728864 - 9728800
Alignment:
Q  111 ttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtgagtagtatc 175  Q
    ||||||||||||| || | |||||||  || ||||||||||||||||| | ||||||||||||||    
T  9728864 ttaattaaaggatatagtggtaatttaagggtgtaatttggattatttggggtgtgagtagtatc 9728800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 14286696 - 14286621
Alignment:
Q  92 ttgaattgaaatttttattttaattaaaggatgtattagtaattttgggatgtaatttggattattttgagtgtga 167  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||| |||| ||||| |||  || ||||| ||||||    
T  14286696 ttgatttgaaatttttattttaattaaagggtatattagtcattctggggtgtaacttgtttttttttgggtgtga 14286621  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 18377237 - 18377288
Alignment:
Q  125 tattagtaattttgggatgtaatttggattattttgagtgtgagtagtatct 176  Q
    |||||||||||||||| || || ||||||||||| | |||||||||||||||    
T  18377237 tattagtaattttggggtgcaacttggattatttggggtgtgagtagtatct 18377288  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 31546673 - 31546624
Alignment:
Q  97 ttgaaatttttattttaattaaaggatgtattagtaattttgggatgtaa 146  Q
    ||||||||||||||||| ||||||| | ||||||| ||| ||||||||||    
T  31546673 ttgaaatttttattttagttaaagggtatattagtcattctgggatgtaa 31546624  T

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Target: scaffold0562 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 5795 - 5747
Alignment:
Q  92 ttgaattgaaatttttattttaattaaaggatgtattagtaattttggg 140  Q
    |||| ||||||||||||||||| ||||||||| ||||||| ||| ||||    
T  5795 ttgatttgaaatttttattttagttaaaggatatattagtcattctggg 5747  T

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