View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11849_low_14 (Length: 392)
Name: NF11849_low_14
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 44315846 - 44315477
Alignment:
| Q |
10 |
tgagattgactcttgctcttggaggatgctaaaacatttaggcattgaatcaccaaatgcacgagttatggacactattcaatggttgtttgaacactct |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44315846 |
tgagattgactcttgctcttggaggatgctaaaacatttagactttgaatcaccaaatgcacgagttatggacactattcaatggttgtttgaacactat |
44315747 |
T |
|
| Q |
110 |
tgatggtctatgactctactgatgacaaactcaactctagagtgatcttagcctgaacacaactcgtttcggcttgttaactcggatcatatttgtaaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315746 |
tgatggtctatgactctactgatgacaaactcaactctagagtgatcttagcctgaacacaactcgtttcggcttgttaactcggatcatatttgtaaat |
44315647 |
T |
|
| Q |
210 |
ggtcattcatacgcgcacta---ttatcgaatggactaaacctgtgacaggtgaccatgttatatggataaaagagagcgtattgaatgtgacagattca |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44315646 |
ggtcattcatacgcgcactagagttatcgaatggactaaacctgtgacaggtgaccatgttatatggataaaagagagtgtattgaatgtgacagattca |
44315547 |
T |
|
| Q |
307 |
caacatacatgatttttcatttatgcatagaacagtaacatttacaaaagttgcccgtgtacaataaaat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44315546 |
caacatacatgatttttcatttatgcatagaacagtaacatttacaaaagttgcccgtgtacaataaaat |
44315477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University