View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11849_low_15 (Length: 392)
Name: NF11849_low_15
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 36884160 - 36883785
Alignment:
| Q |
1 |
ttggacatttaactctaaatgatgcccttcacagtggagcaagtgaaccactagcgtggttccaacgtctccggattgctttaggtgttgctcaggctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884160 |
ttggacatttaactctaaatgatgcccttcacagtggagcaagtgaaccactagcgtggttccaacgtctccggattgctttaggtgttgctcaggctct |
36884061 |
T |
|
| Q |
101 |
ggagtaagttccatgctgcgactaaaattctagacttgttcatatgaaagtagaattgtaggtaatactgtcttaactctaaaaagtcaaggaaatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884060 |
ggagtaagttccatgctgcgactaaaattctagacttgttcatatgaaagtagaattgtaggtaatactgtcttaactctaaaaagtcaaggaaatgttt |
36883961 |
T |
|
| Q |
201 |
tcagctatttgcactcggcgtgctgccctcctgtcccccatggtaacttgaaggctgccaatgttctactggatgaaaatttgacgcctcgtgttggtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36883960 |
tcagctatttgcactcggcgtgctgccctcctgtcccccatggtaacttgaaggctgccaatgttctactggatgaaaatttgacgcctcgtgttggtga |
36883861 |
T |
|
| Q |
301 |
ctgtagcttggctattttgagaccattcatgaagagcaatcaagttaaatttccagtaagtcactgcaaagattct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36883860 |
ctgtagcttggctattttgagaccattcatgaagagcaatcaagttaaatttccagtaagtcactgcaaagattct |
36883785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 318
Target Start/End: Complemental strand, 22554330 - 22554205
Alignment:
| Q |
193 |
aaatgttttcagctatttgcactcggcgtgctgccctcctgtcccccatggtaacttgaaggctgccaatgttctactggatgaaaatttgacgcctcgt |
292 |
Q |
| |
|
|||| ||| ||||||| ||||||| ||| || |||||||||| | ||||| |||||||||||||||||| |||||||| ||||||| ||| | ||||| |
|
|
| T |
22554330 |
aaatatttacagctatctgcactccacgttctcccctcctgtcactcatggcaacttgaaggctgccaatattctactgaatgaaaacctgatggctcgt |
22554231 |
T |
|
| Q |
293 |
gttggtgactgtagcttggctatttt |
318 |
Q |
| |
|
||| ||||||| ||||||||||||| |
|
|
| T |
22554230 |
gtttctgactgtggcttggctatttt |
22554205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University