View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_16 (Length: 390)
Name: NF11849_low_16
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 12963292 - 12963667
Alignment:
| Q |
1 |
caaaatttattaatatattaattaactcctttttaaagttttggtattacatgctattgacatactagtggtttggccaaatttgtgacaatgaaaggga |
100 |
Q |
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| T |
12963292 |
caaaattgattaatatattaattaactcctttttaaagttttggtattacatgctattgacatactagtggtttggccaaatttgtgacaatgaaaggga |
12963391 |
T |
|
| Q |
101 |
cagtgatatttgtcttgatacaaaagattgatgtcgatgcttgcatgagggtgaagtgtatattatttgtaattatactcaacatgcatttgtatcaaca |
200 |
Q |
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| T |
12963392 |
cagtgatatctgtcttgatacaaaagattgatgttgatgcttgcatgagggtgaagtgtgtattatttgtaattatactcaacatgcatttgtatcaaca |
12963491 |
T |
|
| Q |
201 |
ttcaaatgaaaatgagattattgtcgtattaacaacatcattgatttgttcattatcgtatattaatgtatgctccactgtattttgtcctctactttcc |
300 |
Q |
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| T |
12963492 |
ttcaaatgagaatgagattattgtcgtattaacaacatcattgatttgttcattatcgtatattaatgtatgctccactgtattttgtcctctactttcc |
12963591 |
T |
|
| Q |
301 |
cataacctgttcatgttctgcaccgaagatataagcaatgttataccatcattttattctacgacattcttttcat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12963592 |
cataacctgttcatgttctgcaccgaagatataagcaatgttataccatcattttattctacgacattcttttcat |
12963667 |
T |
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