View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_2 (Length: 701)
Name: NF11849_low_2
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Original strand, 26275176 - 26275857
Alignment:
| Q |
1 |
ggaaaataaatataaagaactcagccaagtggcagctgagtaataaacaaaaggttgtttaaggttacttgtgactgacaaattgtcgaggatgtgaata |
100 |
Q |
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| T |
26275176 |
ggaaaataaatataaagaactcagccaagtggcagctgagtaataaacaaaaggttgtttaaggttacttgtgactgacaaattgtcgaggatgtgaata |
26275275 |
T |
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| Q |
101 |
tgaagcccaaactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttacaccaggtagaaaatgtcgacca |
200 |
Q |
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| T |
26275276 |
tgaagatcaaactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactacctaacatgaaatattacaccaggtagaaaatgtcgacca |
26275375 |
T |
|
| Q |
201 |
tattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggtttatgacatgtattttggcactgatgtacatctaaaacttaaatgtctcaac |
300 |
Q |
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| T |
26275376 |
tattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggtttatgacatgtattttggcactgatgtagatctaaaacttcaatgtctcaac |
26275475 |
T |
|
| Q |
301 |
agttacatgcaatgtatcgtacctgtatcgaagtgctacgattgcagtcgccgcaatttatatttgcaacattgagttgtgatccaagagcacgtgaata |
400 |
Q |
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| T |
26275476 |
agttacatgcaatgcatcgtacctgtatcgaagcgctacgattgcagtcgccgcaatttatatttgcaacattgagatgtgatccaagagcacgtgaata |
26275575 |
T |
|
| Q |
401 |
caagtttctagccatcccaattcttcattgtcatttgcaagtttaagttggcatccaatttttcctttataaatgccagctcagatataggtcaaacaga |
500 |
Q |
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| T |
26275576 |
caagtttctagccaacccaattcttcattgtcatttgcaagtttatgttagtatccaatttttcctttataaatgccagctcagatataggtcaaacaga |
26275675 |
T |
|
| Q |
501 |
tgtgataatttggcatccagcatagcagatttagaagcttgaattatgttgaagctacagcctacttccacaataacactccgaaacagatgttccatcg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26275676 |
tgtgataatttggcatccagcatagcagatttagaagcttgaattatgttgaagctacagcctacttccacaataacactccgaaacagatgttccatcg |
26275775 |
T |
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| Q |
601 |
aatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacac |
682 |
Q |
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| T |
26275776 |
aatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctatcaacac |
26275857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 26250885 - 26250817
Alignment:
| Q |
110 |
aactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttac |
178 |
Q |
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| T |
26250885 |
aactgaagatgggaaaggtgagaaagttggtattgcaggtggtagaaactacctaacatgaaatcttac |
26250817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 676
Target Start/End: Original strand, 39397830 - 39397916
Alignment:
| Q |
590 |
atgttccatcgaatgcgcattattattgaaatatctatcattacgttctatccaagtcctccagataatgtgcagaactgctgctat |
676 |
Q |
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|||||||| ||||| ||| |||||||||||||| | ||||||||||||||| || || |||| | |||||||||| |||||||| |
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| T |
39397830 |
atgttccaacgaattcgccttattattgaaataacgctcattacgttctatctaaatcttccaaaccgtgtgcagaaccgctgctat |
39397916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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