View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11849_low_21 (Length: 330)
Name: NF11849_low_21
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_21 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 42 - 312
Target Start/End: Complemental strand, 13942994 - 13942724
Alignment:
| Q |
42 |
gtggtctgactattgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaa |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
13942994 |
gtggtctgactattgacaacgaagatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttcacatgtggtcgatatctaatcttaa |
13942895 |
T |
|
| Q |
142 |
taaatccaatagttggttgaaaatggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattccttg |
241 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
13942894 |
taaatctaatagttggttgaaaatggttggtaagttaccaaatctaagagaactaagtttaagatattgtgacctttctgatcattttatccattcattg |
13942795 |
T |
|
| Q |
242 |
agtcaatccatgttcaactttttcacttctctttctatccttgatctctcttggaacaaatttgcgtcatc |
312 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
13942794 |
agtcaatccaagttcaacttttcaacttctctttctatccttgatctctcttggaacaactttgcatcatc |
13942724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 14016978 - 14016761
Alignment:
| Q |
74 |
ggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaataaatccaatagttggttgaaaatggttggta |
173 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
14016978 |
ggaggtcagtggttgtctaatcttaattctttaacccatcttcacatgtcgtcgatatctaatcttaataaatctaatagttggttgcaaatggttggta |
14016879 |
T |
|
| Q |
174 |
agttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattccttgagtcaatccatgttcaactttttcacttctct |
273 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |
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|
| T |
14016878 |
agttaccaaaactgagagaactaagtttaagagattgtggcctttctgatcattttatccattcattgagtcaatccaagttcaacttttccacttctct |
14016779 |
T |
|
| Q |
274 |
ttctatccttgatctctc |
291 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14016778 |
ttctatccttgatctctc |
14016761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 65 - 312
Target Start/End: Original strand, 13861138 - 13861385
Alignment:
| Q |
65 |
gatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaataaatccaatagttggttgaaaa |
164 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||||||||||| | ||||||| |||||||||||| |||||| ||||||||||| |||| |
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|
| T |
13861138 |
gatcacagtggaggtcagtggttgtctaatcttacttctttaacccatcttcatctgatgtcaatatctaatcttgataaatttaatagttggttaaaaa |
13861237 |
T |
|
| Q |
165 |
tggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattccttgagtcaatccatgttcaacttttt |
264 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
13861238 |
tggttggtaagttaccaaaactaagagaactaagtttaagaaattgtgacctttctgatcattttatccattcattgagtcaatccaagttcaacttttc |
13861337 |
T |
|
| Q |
265 |
cacttctctttctatccttgatctctcttggaacaaatttgcgtcatc |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
13861338 |
caattctctttctatccttgatctctctgtgaacaactttgtgtcatc |
13861385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 46 - 313
Target Start/End: Complemental strand, 14086593 - 14086326
Alignment:
| Q |
46 |
tctgactattgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaataaa |
145 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||| |
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|
| T |
14086593 |
tctgacaattgacaacaaggatcacagtggaggtcagtggttgtctaatctaacttctttaacccatcttcgcctgatgtgaatatctaatcttgataaa |
14086494 |
T |
|
| Q |
146 |
tccaatagttggttgaaaatggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattccttgagtc |
245 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||| |||| ||||||| ||||||| ||||||||| |||||| |
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|
| T |
14086493 |
tttaatagttggtttcaaatggttggtaagttaacaaaactaagagaactaagtttaagaaattgtgacctttcttatcatttcatccattccctgagtc |
14086394 |
T |
|
| Q |
246 |
aatccatgttcaactttttcacttctctttctatccttgatctctcttggaacaaatttgcgtcatct |
313 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
14086393 |
aatccaagttcaacttttccacttctctttctatcctcgatctctcttggaacagctttgcttcatct |
14086326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 65 - 313
Target Start/End: Complemental strand, 14112383 - 14112135
Alignment:
| Q |
65 |
gatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaataaatccaatagttggttgaaaa |
164 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
14112383 |
gatcacagtggaggtcagtggttgtctaatctaacctctttaacccatcttcatctgatgtcaatatctaatcttgataaatttaatagttggtttcaaa |
14112284 |
T |
|
| Q |
165 |
tggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattccttgagtcaatccatgttcaacttttt |
264 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
14112283 |
tggttggtaagttaccaaaactaagagaactaagtttaagaaattgtgacctttctgatcattttatccattcattgagtcaatccaagttcaacttttc |
14112184 |
T |
|
| Q |
265 |
cacttctctttctatccttgatctctcttggaacaaatttgcgtcatct |
313 |
Q |
| |
|
|| ||||||||| ||||||||||| |||| |||| | ||| |||||||| |
|
|
| T |
14112183 |
caattctctttcaatccttgatctttctttgaactactttacgtcatct |
14112135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 53 - 313
Target Start/End: Original strand, 13891152 - 13891410
Alignment:
| Q |
53 |
attgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaataaatccaata |
152 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||| |||| ||||||| |||| |||||||||||| |
|
|
| T |
13891152 |
attgacaacggagatcacaacggaggtc--tggttatctaatcttacttctttaacccatcttcacatgttgtcaatatctagtcttgataaatccaata |
13891249 |
T |
|
| Q |
153 |
gttggttgaaaatggttggtaagttaccaaaactgagagaacta-agtctaagaagatgtggcctttctgatcattttatccattccttgagtcaatcca |
251 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
13891250 |
gttggttgcaaatggttggtaagctactaaaactgagagaactagagt-taataagttgtggcctttctgatcattttatccattctttgagtaaatcga |
13891348 |
T |
|
| Q |
252 |
tgttcaactttttcacttctctttctatccttgatctctcttggaacaaatttgcgtcatct |
313 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
13891349 |
agttcaatttttccacatctctttctatccttgatctctcttcgaacaacttcgcatcatct |
13891410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 40 - 312
Target Start/End: Original strand, 13471130 - 13471402
Alignment:
| Q |
40 |
tggtggtctgactattgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatctt |
139 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| ||||||| ||| |||||||| | || ||||||||||||||| ||||| ||| ||||| |||||| |
|
|
| T |
13471130 |
tggtgatctgactatggacaacgaagatcacagtagaggtcagtggctgtctaattttacctctttaacccatcttcacatgtcgtcgatatcaaatctt |
13471229 |
T |
|
| Q |
140 |
aataaatccaatagttggttgaaaatggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattcct |
239 |
Q |
| |
|
||| || |||||||||||| ||| ||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
13471230 |
tatagatttaatagttggttggaaacagttggtaagctaccaaaactgatagaactaagtttaagaaattgtggcctttctgatcattttgtccattcct |
13471329 |
T |
|
| Q |
240 |
tgagtcaatccatgttcaactttttcacttctctttctatccttgatctctcttggaacaaatttgcgtcatc |
312 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
13471330 |
tgagtcaatccaagttcaaattttccacttctctttctatccttgatctctctcggaacaaatttgtgtcatc |
13471402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 288
Target Start/End: Complemental strand, 14026855 - 14026725
Alignment:
| Q |
158 |
ttgaaaatggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattttatccattccttgagtcaatccatgttca |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
14026855 |
ttgaaaatggttggtaagttaccaaaactgagagaactaagtttacaaaattgtggcctttctgatcattttatccattcattgagtcaatccaagttca |
14026756 |
T |
|
| Q |
258 |
actttttcacttctctttctatccttgatct |
288 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |
|
|
| T |
14026755 |
acttttccacttccctttctatccttgatct |
14026725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 13873397 - 13873692
Alignment:
| Q |
19 |
ttatcttggagcaggatatggtggtggt---ctgactattgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatctt |
115 |
Q |
| |
|
||||||||||| ||||||||||| | || |||| ||||||||| |||||||| |||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
13873397 |
ttatcttggaggaggatatggtgatagtactctgataattgacaacgaggatcacagtggaggtaagtggttgttgaatctaacttctttaacccatctt |
13873496 |
T |
|
| Q |
116 |
gacatgatgtccatatctaatcttaataaatccaatagttggttgaaaatggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcc |
215 |
Q |
| |
|
| ||| |||| |||||||||||| ||| || |||||||||||| || ||||||||||| |||||||||||| |||||||||| || ||| ||||| | |
|
|
| T |
13873497 |
cagatgttgtcaatatctaatcttgatagatttaatagttggttgcaattggttggtaagctaccaaaactgaaagaactaagtttagaaagttgtggtc |
13873596 |
T |
|
| Q |
216 |
tttctgatcattttatccattccttgagtcaatccatgttcaactttttcacttctctttctatccttgatctctcttggaacaaatttgcgtcat |
311 |
Q |
| |
|
||||||||||| ||| | ||| | ||||| | | | ||||||| || |||||| ||||||||||| |||||| ||||||| |||| ||||| |
|
|
| T |
13873597 |
tttctgatcatattactctttcatcgagtcctttaaatcttaacttttccagttctctctctatccttgacctctctcggaacaactttgtgtcat |
13873692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 14049091 - 14048917
Alignment:
| Q |
54 |
ttgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatcttgacatgatgtccatatctaatcttaataaatccaatag |
153 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| ||| |||| |||||| ||| || ||||| |
|
|
| T |
14049091 |
ttgacaacagggatcacaatggaggtcagtggttgtctaatcttacttctttaacccatcttcacatgtcgtcaatattgaatcttgatagatttaatag |
14048992 |
T |
|
| Q |
154 |
ttggttgaaaatggttggtaagttaccaaaactgagagaactaagtctaagaagatgtggcctttctgatcattt |
228 |
Q |
| |
|
|| |||| |||||||||||||| |||||||| || ||||||||| | ||| | |||| ||||||||||||||| |
|
|
| T |
14048991 |
tttgttggaaatggttggtaagctaccaaaattgggagaactaaatttaacagattgtgacctttctgatcattt |
14048917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 14026929 - 14026857
Alignment:
| Q |
42 |
gtggtctgactattgacaacagggatcacaacggaggtcattggttgtctaatctaacttctttaacccatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
14026929 |
gtggtctgactattgacaacagggatcacaacggaggtcagtggttgtctaatcttacttctttaacccatct |
14026857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 14048918 - 14048874
Alignment:
| Q |
268 |
ttctctttctatccttgatctctcttggaacaaatttgcgtcatc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14048918 |
ttctctttctatccttgatctctcttggaacaactttgcgtcatc |
14048874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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