View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11849_low_23 (Length: 313)
Name: NF11849_low_23
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 32875988 - 32876293
Alignment:
| Q |
1 |
caaaagatatccaaatattgagtttatgtttggtatcattttgagatgtcagaattgtggtggcacactgtgatggtaggttttgcaaaatcacaacggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32875988 |
caaaagatatccaaatattgagtttatgtttggtatcattttgagatgtcagaattgtggtggcacactgtgatggtaggttttgcaaaatcacaacggt |
32876087 |
T |
|
| Q |
101 |
taccatgattctgaaatacttcattgtgataccaaagtattttattattggtaaaatgaaatacaacatgtaagcactgaagtattctgaacacttgtag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876088 |
caccatgattctgaaatacttcattgtgataccaaagtattttattattggtaaaatgaaatacaacatgtaagcactgaagtattctgaacacttgtag |
32876187 |
T |
|
| Q |
201 |
ctagtttgtatttggaacgagttgactttatgagtttttgtggtttgtgctcgtaattcagaggaataatttcttgttcagataattttatgtggcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876188 |
ctagtttgtatttggaacgagttgactttatgagtttttgtggtttgtgctcgtaattcagaggaataatttcttgttcagataattttatgtggcttct |
32876287 |
T |
|
| Q |
301 |
ctgctt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
32876288 |
ctgctt |
32876293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University