View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_25 (Length: 299)
Name: NF11849_low_25
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_25 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 285
Target Start/End: Original strand, 8332524 - 8332715
Alignment:
| Q |
110 |
tcacattattcaattctgagaaattcttttctcttttattttttccaatatatgtgtatgcctaatcactttttatttgtgtttatgaccaagt-agtat |
208 |
Q |
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| T |
8332524 |
tcacatcattcaattatgagaaattcatttctcttttattttttccaatttatgtgcatgcctaatcactttttatttgtgtttatgactaagtaagtat |
8332623 |
T |
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| Q |
209 |
ttctctaattatgtattt---------------attccattccattctattccaccacttgccgccaacccaaacataacctagatattttt |
285 |
Q |
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| T |
8332624 |
ttctctaattgagtatttattccattccatttaattccattccattctattccaccacttgccgccaacccaaacataacctagatattttt |
8332715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 8332423 - 8332451
Alignment:
| Q |
9 |
tgttaattcggtagagcaagtcttgcata |
37 |
Q |
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| T |
8332423 |
tgttaattcggtagagcaagtcttgcata |
8332451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 31174127 - 31174200
Alignment:
| Q |
131 |
aattcttttctcttttattttttccaatatatgtgtatgcctaatcactttttatttgtgtttatgaccaagta |
204 |
Q |
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| T |
31174127 |
aattattttctcttttaattttttcaatttatgtgtgtgtttaatcacttttttttcgtgtttatgaccaagta |
31174200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 16302843 - 16302890
Alignment:
| Q |
229 |
tccattccattctattccaccacttgccgccaacccaaacataaccta |
276 |
Q |
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| T |
16302843 |
tccattccattccattccaccacttgccaccaatccaaacatagccta |
16302890 |
T |
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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 70420 - 70493
Alignment:
| Q |
131 |
aattcttttctcttttattttttccaatatatgtgtatgcctaatcactttttatttgtgtttatgaccaagta |
204 |
Q |
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| T |
70420 |
aattattttctcttttaattttatcaatttatgtgcgtgtctaaccactttttatttgtgtttgtgaacaagta |
70493 |
T |
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