View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11849_low_29 (Length: 233)

Name: NF11849_low_29
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11849_low_29
NF11849_low_29
[»] chr4 (3 HSPs)
chr4 (9-218)||(27971766-27971975)
chr4 (13-107)||(37980105-37980199)
chr4 (156-193)||(27970791-27970828)
[»] chr2 (4 HSPs)
chr2 (9-96)||(25384556-25384643)
chr2 (22-97)||(3697367-3697442)
chr2 (10-87)||(26482114-26482191)
chr2 (22-102)||(6099481-6099561)
[»] chr7 (1 HSPs)
chr7 (9-102)||(48125137-48125230)
[»] chr5 (1 HSPs)
chr5 (10-63)||(31669026-31669079)
[»] chr3 (1 HSPs)
chr3 (9-61)||(42799751-42799803)
[»] chr1 (1 HSPs)
chr1 (22-102)||(38939235-38939315)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 27971975 - 27971766
Alignment:
Q  9 gtggtgttggccagggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttggcctctttggaaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  27971975 gtggtgttggccagggaccttggagtctgctcctctcaaggtttctggttcgattatgcgcggtgccaatttcggtgggatggtttggccaatttggaaa 27971876  T
Q  109 atgtttagggtgtactacacttaagtttcatttggtgtctttttgaggtattcatggaagttgaaaggttttgttatgttgtgtggctacaagctatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27971875 atgtttagggtgtactacacttaagtttcatttggtgtctttttgaggtattcatggaagttgaaaggttttgttatgttgtgtggctacaagctatttt 27971776  T
Q  209 ttcaaatggt 218  Q
    ||||||||||    
T  27971775 ttcaaatggt 27971766  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 37980199 - 37980105
Alignment:
Q  13 tgttggccagggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttggcctctttggaa 107  Q
    |||||||  ||||||||||| | ||||||||||||||| || ||||||||| | | | ||| ||||||| | ||| | ||||||| |||||||||    
T  37980199 tgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctccccagtgtcaatttcagcgggctagtttggcttctttggaa 37980105  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 27970828 - 27970791
Alignment:
Q  156 gtattcatggaagttgaaaggttttgttatgttgtgtg 193  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  27970828 gtattcatggaagttgaagggttttgttgtgttgtgtg 27970791  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 25384556 - 25384643
Alignment:
Q  9 gtggtgttggccagggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttgg 96  Q
    |||||||||||  ||||||||||| | ||||||||||| ||| || ||||||||||||| | |||||||||| |||||| | ||||||    
T  25384556 gtggtgttggcttgggaccttggagtgtgctcctctcagggtctcgggttcgattatgctcggtgccaattttggtgggttagtttgg 25384643  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 3697442 - 3697367
Alignment:
Q  22 gggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttggc 97  Q
    |||||||||||   ||||||||||||||| |||||||||||| | | | ||||||||||||| ||| | |||||||    
T  3697442 gggaccttggagagtgctcctctcaaggtctctggttcgattctcctcggtgccaatttcggcgggttagtttggc 3697367  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 26482114 - 26482191
Alignment:
Q  10 tggtgttggccagggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtggg 87  Q
    ||||||||||  ||||||| ||| | ||||||||||||||| || ||||||||| | | | ||||||||||| |||||    
T  26482114 tggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaggttcgattctcctcagtgccaatttcagtggg 26482191  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 6099561 - 6099481
Alignment:
Q  22 gggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttggcctctt 102  Q
    ||||||||||| | ||||||||||||||| || ||||||||| | | |  ||||||| |||||||| | ||||||| ||||    
T  6099561 gggaccttggagtgtgctcctctcaaggtctcaggttcgattctccccgctgccaatatcggtgggctagtttggcttctt 6099481  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 48125230 - 48125137
Alignment:
Q  9 gtggtgttggccagggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttggcctctt 102  Q
    |||||||||||  ||||||||||| | ||||||||  ||||| || ||||| ||| | | | ||||||||||||||||| | ||||||| ||||    
T  48125230 gtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggttcaattttccccggtgccaatttcggtgggctagtttggcttctt 48125137  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 31669079 - 31669026
Alignment:
Q  10 tggtgttggccagggaccttggattctgctcctctcaaggtttctggttcgatt 63  Q
    ||||||||||  ||||||||||| ||||||||||||||||| |  |||||||||    
T  31669079 tggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgatt 31669026  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 42799803 - 42799751
Alignment:
Q  9 gtggtgttggccagggaccttggattctgctcctctcaaggtttctggttcga 61  Q
    |||||||||||  ||||||||||| | ||||||||||||||| || |||||||    
T  42799803 gtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcga 42799751  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 38939235 - 38939315
Alignment:
Q  22 gggaccttggattctgctcctctcaaggtttctggttcgattatgcgctgtgccaatttcggtgggatggtttggcctctt 102  Q
    ||||||||||| | ||||||||||||||| ||||||| |||| | | |  || ||||||||||||| | ||||||| ||||    
T  38939235 gggaccttggagtgtgctcctctcaaggtctctggtttgattctccccaatgtcaatttcggtgggctagtttggcttctt 38939315  T

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