View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11849_low_3 (Length: 589)

Name: NF11849_low_3
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11849_low_3
NF11849_low_3
[»] chr7 (26 HSPs)
chr7 (3-540)||(5196315-5196850)
chr7 (21-525)||(18815416-18815918)
chr7 (336-532)||(27990287-27990483)
chr7 (330-528)||(40892094-40892292)
chr7 (330-528)||(21607932-21608130)
chr7 (329-541)||(37075919-37076131)
chr7 (336-541)||(9403461-9403666)
chr7 (431-525)||(14769695-14769788)
chr7 (431-525)||(15220146-15220239)
chr7 (17-101)||(8457202-8457287)
chr7 (329-541)||(34981528-34981740)
chr7 (21-104)||(27987590-27987673)
chr7 (330-396)||(20705822-20705888)
chr7 (330-396)||(20873866-20873932)
chr7 (445-527)||(38302528-38302610)
chr7 (337-476)||(8457521-8457660)
chr7 (21-543)||(27868589-27869099)
chr7 (10-192)||(40891775-40891956)
chr7 (330-387)||(36575712-36575769)
chr7 (20-104)||(12121702-12121786)
chr7 (20-104)||(24819813-24819897)
chr7 (20-104)||(36575404-36575488)
chr7 (21-100)||(586904-586983)
chr7 (10-104)||(34981963-34982058)
chr7 (10-104)||(37075601-37075696)
chr7 (435-505)||(47553006-47553076)
[»] chr1 (15 HSPs)
chr1 (20-442)||(28520859-28521279)
chr1 (329-512)||(5556977-5557160)
chr1 (290-528)||(37666047-37666285)
chr1 (428-525)||(40392411-40392507)
chr1 (436-528)||(32152386-32152478)
chr1 (444-525)||(24546716-24546797)
chr1 (431-476)||(26995711-26995756)
chr1 (20-104)||(10004047-10004131)
chr1 (17-104)||(24545076-24545163)
chr1 (330-393)||(45757512-45757575)
chr1 (10-100)||(49369887-49369978)
chr1 (474-528)||(4161989-4162043)
chr1 (33-107)||(26996076-26996150)
chr1 (332-393)||(41343140-41343201)
chr1 (336-381)||(49369608-49369653)
[»] chr6 (10 HSPs)
chr6 (21-495)||(17227655-17228135)
chr6 (330-528)||(666958-667155)
chr6 (330-396)||(28605217-28605283)
chr6 (20-107)||(7218372-7218459)
chr6 (422-474)||(7578681-7578733)
chr6 (20-104)||(18295418-18295502)
chr6 (427-542)||(12736507-12736621)
chr6 (27-104)||(2894353-2894430)
chr6 (422-463)||(23659814-23659855)
chr6 (20-100)||(667385-667465)
[»] chr4 (21 HSPs)
chr4 (143-525)||(25134975-25135358)
chr4 (32-525)||(24059340-24059831)
chr4 (332-532)||(12915481-12915681)
chr4 (20-543)||(8110597-8111118)
chr4 (331-528)||(29192646-29192843)
chr4 (339-492)||(50694093-50694246)
chr4 (329-541)||(15649396-15649608)
chr4 (336-475)||(6614370-6614509)
chr4 (330-376)||(12290638-12290684)
chr4 (330-393)||(23158480-23158543)
chr4 (10-264)||(4303213-4303466)
chr4 (20-104)||(36279225-36279309)
chr4 (20-104)||(51872801-51872885)
chr4 (10-100)||(17826792-17826883)
chr4 (330-393)||(36279533-36279596)
chr4 (422-463)||(13026322-13026363)
chr4 (356-501)||(17469480-17469625)
chr4 (332-393)||(18116714-18116775)
chr4 (336-381)||(29123774-29123819)
chr4 (72-104)||(23158224-23158256)
chr4 (435-463)||(40304622-40304650)
[»] chr3 (25 HSPs)
chr3 (20-512)||(48547264-48547754)
chr3 (189-532)||(30737179-30737521)
chr3 (332-528)||(42459624-42459819)
chr3 (290-532)||(39633122-39633364)
chr3 (330-541)||(53152415-53152626)
chr3 (331-512)||(10753773-10753954)
chr3 (331-393)||(42462549-42462611)
chr3 (332-465)||(17154139-17154272)
chr3 (428-525)||(21383487-21383583)
chr3 (10-104)||(17153818-17153913)
chr3 (330-541)||(32945572-32945783)
chr3 (431-525)||(25996747-25996841)
chr3 (336-524)||(28393217-28393404)
chr3 (10-100)||(23571632-23571723)
chr3 (359-474)||(49764130-49764245)
chr3 (428-528)||(8542199-8542299)
chr3 (428-512)||(8594967-8595051)
chr3 (9-100)||(23603382-23603474)
chr3 (422-474)||(48352757-48352809)
chr3 (330-393)||(3514513-3514576)
chr3 (290-492)||(16663706-16663908)
chr3 (332-393)||(23571953-23572014)
chr3 (20-104)||(9819176-9819260)
chr3 (33-109)||(10754174-10754250)
chr3 (72-112)||(16664084-16664124)
[»] chr5 (12 HSPs)
chr5 (20-512)||(27891408-27891898)
chr5 (330-541)||(5825299-5825510)
chr5 (330-541)||(6678906-6679117)
chr5 (331-543)||(31963003-31963215)
chr5 (330-396)||(11265851-11265917)
chr5 (427-500)||(16862873-16862948)
chr5 (332-474)||(10462469-10462611)
chr5 (290-486)||(38931505-38931701)
chr5 (20-254)||(11265993-11266225)
chr5 (10-104)||(6678589-6678682)
chr5 (10-104)||(5824980-5825075)
chr5 (314-366)||(16862772-16862824)
[»] chr8 (8 HSPs)
chr8 (287-528)||(31423502-31423743)
chr8 (329-541)||(2959919-2960131)
chr8 (324-393)||(26390565-26390634)
chr8 (20-98)||(31423263-31423341)
chr8 (20-106)||(29532471-29532557)
chr8 (72-109)||(10801754-10801791)
chr8 (332-400)||(18182104-18182172)
chr8 (20-100)||(26077748-26077828)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-528)||(58418-58924)
[»] chr2 (15 HSPs)
chr2 (332-528)||(33937107-33937303)
chr2 (332-543)||(22298591-22298802)
chr2 (290-528)||(1258154-1258393)
chr2 (330-541)||(21963089-21963300)
chr2 (330-393)||(30275719-30275782)
chr2 (332-474)||(27914933-27915075)
chr2 (330-383)||(38938311-38938364)
chr2 (10-104)||(23384959-23385054)
chr2 (336-474)||(23384591-23384729)
chr2 (10-104)||(21963524-21963619)
chr2 (10-104)||(21964709-21964804)
chr2 (10-104)||(38938588-38938683)
chr2 (72-109)||(1258572-1258609)
chr2 (67-112)||(22300871-22300916)
chr2 (20-104)||(30276005-30276089)
[»] scaffold0041 (2 HSPs)
scaffold0041 (330-528)||(73992-74190)
scaffold0041 (10-264)||(74256-74509)
[»] scaffold0289 (1 HSPs)
scaffold0289 (33-375)||(10912-11252)
[»] scaffold0003 (2 HSPs)
scaffold0003 (332-465)||(225056-225189)
scaffold0003 (20-107)||(224748-224835)


Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 3 - 540
Target Start/End: Complemental strand, 5196850 - 5196315
Alignment:
Q  3 actggtggagtttgatcatttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggata 102  Q
    |||||||| ||||||| |||||| |||||||| ||| ||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  5196850 actggtggggtttgataatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaaggata 5196751  T
Q  103 atttgtgcaagagagatatgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgac 202  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  5196750 atttgtgcaagaga--tatgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacagggaccatttattttttaagtgcgac 5196653  T
Q  203 cactacggtcatttgtgacttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttg 302  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||    
T  5196652 cactacggtcgtttgtgacttttgatcgcgaattggcttggtattgttacggtttttcatggcgacttaaatattcattcaaaacagttttgtgctcttg 5196553  T
Q  303 gaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaatta 402  Q
    || ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  5196552 gaggctattctaaaatctctaggacaacttttactattatttggattgcggccttatttgttatttgaaaagatcacaacaggagaatttttcacaatta 5196453  T
Q  403 gattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttga 502  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5196452 gattgatcagcttgcagcgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactaccctttttga 5196353  T
Q  503 aggcaaaatcttttaggttgtttacaaacttttgtgta 540  Q
    ||||||||||||||| |||||||| | |||||||||||    
T  5196352 aggcaaaatcttttatgttgtttagagacttttgtgta 5196315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 21 - 525
Target Start/End: Original strand, 18815416 - 18815918
Alignment:
Q  21 tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagata 120  Q
    ||||| |||| |||||||||| |||||||| | ||||| ||| |||  || |||||||||||| |||||||||||||||||||| || | ||||| || |    
T  18815416 tttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagag-ga-a 18815513  T
Q  121 tgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtga 220  Q
    ||| || ||||||||||  || ||||||||||  | |||||| |   |||||||||  ||||||||||||| |||||| || |||||| ||| ||| |||    
T  18815514 tgttctggatgtttccctggtatcttgtgcggtttcatgtggggctgtagaggacaaagaccatttgttttgtaagtgtgatcactacagtcgtttttga 18815613  T
Q  221 cttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatct 320  Q
    ||| ||||  |  |||||||||||||   |||   | |||||||  | ||||||| ||||||  | |||||||||||||||||| | |  || ||||  |    
T  18815614 cttctgatatcccattggcttggtatcaatacaattcttcatggcaatttaaatactcattcaaatcagttttgtgctcttggagggttctcaaaaaatt 18815713  T
Q  321 ctgggaccactttta-ctattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcag 419  Q
    |  |||| | | ||| |||||||||||||| |||||||||||||||| |  |||||  | ||||| ||||||||| | ||| |  || ||||| || ||     
T  18815714 catggac-attcttatctattatttggatttcggtcttatttgttatctagaaagaccgtaacagtagaatttttaataatcattttcatcagcttacaa 18815812  T
Q  420 tgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttagg 519  Q
      ||| | ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| || |||||||| ||||| |||||||||| |||| |    
T  18815813 gacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacattacgttcgactttgactatcccttttggaggcaaaatcatttatg 18815912  T
Q  520 ttgttt 525  Q
    ||||||    
T  18815913 ttgttt 18815918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 336 - 532
Target Start/End: Original strand, 27990287 - 27990483
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggt 435  Q
    |||||||||||||| |||||||||||||||| |  ||| || | ||||  ||||||||| | ||| |  |||||||| || |||  ||| | ||||||||    
T  27990287 ctattatttggatttcggtcttatttgttatctagaaaaatcgtaacaatagaatttttaataatcattttgatcagcttacaggacttctggaaaaggt 27990386  T
Q  436 taaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaaact 532  Q
    ||||||| |||| ||||||||||||||| || ||||| |||||||||| || |||||||| ||||| | |||||||| |||| ||||||| ||||||    
T  27990387 taaactccaaacatattggtggttgaaaacgaactacgttacgttcgactttgactatcccttttggaagcaaaatcatttacgttgttttcaaact 27990483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 528
Target Start/End: Original strand, 40892094 - 40892292
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    |||||||||||||||||||| |||||||||||  ||| || |||||| |||||||||| ||||| || ||  | ||||||||  | | ||  ||| | ||    
T  40892094 cttttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttga 40892193  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    || |||||||||  |||||| |||||||||||||||  ||||||| ||||||| ||| |||||||| ||||| || |||||||  ||| ||||||||||    
T  40892194 aagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaaaatcccttatgttgtttaca 40892292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 330 - 528
Target Start/End: Complemental strand, 21608130 - 21607932
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||| ||||   ||| ||||| || ||  | |||||||| || | ||  ||| | ||    
T  21608130 cttttactattatttggatttcggtcttatttattatatgaaaagatcgcaaattgaggattttccaaaaccaaattgatcatttggaagctctttttga 21608031  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    || |||||||||  |||||| |||||||||||||||  ||||||| ||||||| ||| || ||||| ||||| || ||||| | |||| ||||||||||    
T  21608030 aagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgattatcccttttggagacaaaaacctttatgttgtttaca 21607932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 541
Target Start/End: Original strand, 37075919 - 37076131
Alignment:
Q  329 acttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtag 428  Q
    |||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | |    
T  37075919 actttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttg 37076018  T
Q  429 aaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    ||| |||||||||| |||||| |||||||||||||||  |||||||   ||||| ||| || ||| ||| ||| |||||||| | ||||  |||||||||    
T  37076019 aaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttaca 37076118  T
Q  529 aacttttgtgtaa 541  Q
     ||| ||||||||    
T  37076119 gactattgtgtaa 37076131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 541
Target Start/End: Original strand, 9403461 - 9403666
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggt 435  Q
    |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | |||| |||    
T  9403461 ctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggt 9403560  T
Q  436 taaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaaactttt 535  Q
     |||||| |||||| |||||||||||||||  |||||||   ||||| ||| || ||| ||| ||| |||||||| | ||||  ||||||||| ||| ||    
T  9403561 caaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactatt 9403660  T
Q  536 gtgtaa 541  Q
    ||||||    
T  9403661 gtgtaa 9403666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 14769695 - 14769788
Alignment:
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    |||||||||||| |||| ||||||||||||||| || ||||||| |||||| |||| ||||| || ||||| |||||||||| |||| |||||||    
T  14769695 aaggttaaactccaaacatattggtggttgaaaacgaactacataacgttcaattttgacta-cccttttggaggcaaaatcctttatgttgttt 14769788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 15220146 - 15220239
Alignment:
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    |||||||||||| |||| ||||||||||||||| || ||||||| |||||| |||| ||||| || ||||| |||||||||| |||| |||||||    
T  15220146 aaggttaaactccaaacatattggtggttgaaaacgaactacataacgttcaattttgacta-cccttttggaggcaaaatcctttatgttgttt 15220239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 8457202 - 8457287
Alignment:
Q  17 atcatttttc-tggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggat 101  Q
    |||||||||| |||| ||||||||||||||||||| | ||||| ||| |||| || |||||||||||| |||||| ||||||||||    
T  8457202 atcatttttcgtggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaaggat 8457287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 541
Target Start/End: Complemental strand, 34981740 - 34981528
Alignment:
Q  329 acttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtag 428  Q
    |||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | |    
T  34981740 actttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttg 34981641  T
Q  429 aaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    ||| ||| |||||  |||||| |||||||||||||||  |||||||   ||||| ||| || ||| ||| ||| |||||||| |  |||  |||||||||    
T  34981640 aaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttaca 34981541  T
Q  529 aacttttgtgtaa 541  Q
     ||| ||||||||    
T  34981540 gactattgtgtaa 34981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 27987590 - 27987673
Alignment:
Q  21 tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||| |||| |||||||||| |||||||| | ||||| ||| | || || |||||||||||| ||||||||||||||||||||    
T  27987590 tttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaaggataat 27987673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 20705822 - 20705888
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttca 396  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||| | || ||||| ||||||||    
T  20705822 cttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggaggatttttca 20705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 20873866 - 20873932
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttca 396  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||| | || ||||| ||||||||    
T  20873866 cttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggaggatttttca 20873932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 445 - 527
Target Start/End: Original strand, 38302528 - 38302610
Alignment:
Q  445 aacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttac 527  Q
    |||||||||||||||||||||| ||| |  |||||| ||||| |||||||  ||||| ||||||||||| ||| |||||||||    
T  38302528 aacgtattggtggttgaaagcgaacttcggtacgtttgattttgactatctcttttggaggcaaaatctcttaagttgtttac 38302610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 476
Target Start/End: Original strand, 8457521 - 8457660
Alignment:
Q  337 tattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggtt 436  Q
    ||||||||||||| |||||||||||||||| || |||||  | ||||  |||| |||| | ||| |  |||||||| || ||   ||| | |||||||||    
T  8457521 tattatttggatttcggtcttatttgttatctggaaagaccgtaacaatagaacttttaataatcattttgatcagcttacaagactttttgaaaaggtt 8457620  T
Q  437 aaactctaaacgtattggtggttgaaagcgcactacatta 476  Q
    |||||| |||| ||||| |||||||||| | |||||||||    
T  8457621 aaactccaaacatattgatggttgaaagtgaactacatta 8457660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 543
Target Start/End: Complemental strand, 27869099 - 27868589
Alignment:
Q  21 tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagata 120  Q
    ||||| ||||| |||||||||  ||||||| | || || ||| | || || |||||||||||| ||||||||||||||||||||||| || ||| ||  |    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaaggataatttgcgc-aga-aggaa 27869002  T
Q  121 tgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtga 220  Q
    |||  |||||    ||| |||| | |||||| |||| |||||| ||  |||||| |||||||||||||||||| | || || || || || |   | |||    
T  27869001 tgttattgatccgacccttgtggcatgtgcgaccttgtgtggtaaggaagaggatatggaccatttgttttttcattgtgatcattatggacggctttga 27868902  T
Q  221 cttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatct 320  Q
    ||||||||| |  | ||||||||||||||||||| | | |||||| | ||| ||  |||| |  | || ||||||||| ||||| | |  || || | ||    
T  27868901 cttttgatctcacagtggcttggtattgttacggttctacatggtaatttacattctcatgctaatcaattttgtgcttttggaggtttctcaaagaact 27868802  T
Q  321 ctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagt 420  Q
    || |||| | ||||||||||||||||||          ||||| ||||| |||||  | ||||||| |||||||||  || | ||||||||  | | ||     
T  27868801 ctaggacaagttttactattatttggat----------tttgtcatttggaaagaccgaaacaggataatttttcagcatcacattgatcatctagaagc 27868712  T
Q  421 gcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggt 520  Q
     ||| | |||| | ||||| || ||||||||||||||||||||||| | ||||| | ||||||||| |||||| | ||||| ||| ||||   ||||| |    
T  27868711 tcttcttgaaaggattaaaatccaaacgtattggtggttgaaagcgaattacatcatgttcgattttgactattccttttggaggaaaaactctttagtt 27868612  T
Q  521 tgtttacaaacttttgtgtaatg 543  Q
    |||||| | ||| || |||||||    
T  27868611 tgtttagagactgttttgtaatg 27868589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 40891775 - 40891956
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgt 108  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | || || ||| | || || |||||||||||| |||||||||||||||| ||  |      
T  40891775 gagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttc 40891874  T
Q  109 gcaagagagatatgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttt 192  Q
    ||||||| || |||| ||||| | | || |||| ||||||| |||||| |||||| ||   ||||| |||||||||||||||||    
T  40891875 gcaagag-ga-atgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgttttt 40891956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 36575712 - 36575769
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggag 387  Q
    |||||||||| ||||||||| ||||||||| |  |||||| |||||||||||||||||    
T  36575712 cttttactatcatttggatttcggtcttatatactatttggaaagattgcaacaggag 36575769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 12121786 - 12121702
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||  | |||||  | ||||| ||| | || || |||||||||||| ||||||||||||||||||||    
T  12121786 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataat 12121702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 24819897 - 24819813
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||| | |||||  | ||||| ||| | || || || ||||||||| ||||||||||||||||||||    
T  24819897 atttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataat 24819813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 36575404 - 36575488
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||| | |||||  | ||||| ||| | || || || ||||||||| ||||||||||||||||||||    
T  36575404 atttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataat 36575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 586983 - 586904
Alignment:
Q  21 tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    ||||| ||||||||||||||| | |||||| | ||||| ||| | || || |||||| ||||| ||||||||||||||||    
T  586983 tttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaagga 586904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 34982058 - 34981963
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||  | |||||| | ||||| ||| | ||  | |||||||||||| | ||||||||||||||||||    
T  34982058 gagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaaggataat 34981963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 37075601 - 37075696
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | ||||| ||| | ||  | ||||||| |||| ||||||||||||||||||||    
T  37075601 gagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataat 37075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 47553076 - 47553006
Alignment:
Q  435 ttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaagg 505  Q
    |||||||  |||||| ||||||| |||||||| | ||||||  ||||||||| ||||| ||||||||||||    
T  47553076 ttaaacttcaaacgttttggtggctgaaagcgaattacattttgttcgattttgactaccctttttgaagg 47553006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 4e-89; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 20 - 442
Target Start/End: Original strand, 28520859 - 28521279
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagat 119  Q
    |||||| |||||||||||||||||||||||| ||||||| ||| | || || ||||| |||||| ||||||||||| ||||||||||||| | ||| ||     
T  28520859 atttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttgctacagaggataatttgtgtatgag-ga- 28520956  T
Q  120 atgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtg 219  Q
    |||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||    
T  28520957 atgttcttgatgtctcccttgtgtcttgtgcgaccttatgtggtgagttagaggacagggaccatttgttttttaagtgtgaccactacggtcgattgtg 28521056  T
Q  220 acttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatc 319  Q
     || |||||| |  ||||||||||||||||||||  |||||||||||||||||||||||||||| |  ||||||||||||||||| ||| ||| ||||      
T  28521057 gctcttgatctcacattggcttggtattgttacgatttttcatggtgacttaaatattcattccaataagttttgtgctcttggaggcttttcaaaaaat 28521156  T
Q  320 tctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcag 419  Q
    |   ||||  |||| ||||||||||||||  ||||| ||||||||||||| |||||   || || |||||||||||| ||| |  |||||||  |||||     
T  28521157 ttcaggacatctttcactattatttggatgtcggtcatatttgttatttggaaagacaacagcaagagaatttttcataatcacgttgatcaacttgcaa 28521256  T
Q  420 tgcttgtagaaaaggttaaactc 442  Q
     |||| | |||||||||||||||    
T  28521257 cgcttcttgaaaaggttaaactc 28521279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 329 - 512
Target Start/End: Complemental strand, 5557160 - 5556977
Alignment:
Q  329 acttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtag 428  Q
    |||||||||||||| |||||| |||||||||||||| |||| |||||| |||||||||| ||||||||  |  | ||||||||  | | ||  ||| | |    
T  5557160 acttttactattatatggatttcggtcttatttgttgtttggaaagatcgcaacaggaggatttttcaataccaaattgatcatctcgaagctctttttg 5557061  T
Q  429 aaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatc 512  Q
    ||| |||||||||  |||| || ||||||||||||||  ||| ||| ||||||| ||| |||||||| ||||| || |||||||    
T  5557060 aaagggttaaacttcaaacttactggtggttgaaagcaaacttcatcacgttcgcttttgactatcccttttggagacaaaatc 5556977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 528
Target Start/End: Complemental strand, 37666285 - 37666047
Alignment:
Q  290 ttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaa 389  Q
    ||||||||||| ||  | | ||| |||| |||| |||| | ||||||||||||||||||| |||| |||||  | ||||| |||||| | ||||||||||    
T  37666285 ttttgtgctctcgggggtttttcaaaaaactctaggacaagttttactattatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 37666186  T
Q  390 tttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcga 489  Q
    |||||||  || |  |||||||  ||| ||  ||  | |||| ||| |||||| |||| | ||||||||||||| || | ||||||| ||||||||| ||    
T  37666185 tttttcagcatcaatttgatcatcttgaagctctacttgaaagggtcaaactccaaacattttggtggttgaaaacgaattacattatgttcgattttga 37666086  T
Q  490 ctatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    |||||| | ||| ||| |||||| ||||  |||||||||    
T  37666085 ctatccctattggaggaaaaatcctttactttgtttaca 37666047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 525
Target Start/End: Complemental strand, 40392507 - 40392411
Alignment:
Q  428 gaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| ||  ||||||| ||||| |||||||||  |||| |||||||    
T  40392507 gaaaaggttaaactccaaacatattggtggttgaaagcgaactacatgacgttcgactt-tactatcccttttggaggcaaaattatttatgttgttt 40392411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 528
Target Start/End: Original strand, 32152386 - 32152478
Alignment:
Q  436 taaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    |||||||||||||| |||||||||||||||| | ||||| | ||||||||| |||||||||| ||| ||| |||||| ||||  |||||||||    
T  32152386 taaactctaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccttattggaggaaaaatcctttactttgtttaca 32152478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 525
Target Start/End: Original strand, 24546716 - 24546797
Alignment:
Q  444 aaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    |||| |||||||||||  ||||| | |||||||||||| | || |||||||  |||||||||||||||| |||| |||||||    
T  24546716 aaacatattggtggttagaagcgaattacattacgttcaactttgactatctcttttgaaggcaaaatcctttatgttgttt 24546797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 476
Target Start/End: Complemental strand, 26995756 - 26995711
Alignment:
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacatta 476  Q
    |||||||||||| |||| |||||||||||||||||| |||||||||    
T  26995756 aaggttaaactccaaacatattggtggttgaaagcgaactacatta 26995711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 10004131 - 10004047
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||| | |||||  | ||||| |||   || || |||||||||||| ||||||||||||||||||||    
T  10004131 atttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaaggataat 10004047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 24545076 - 24545163
Alignment:
Q  17 atcatttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||| || | ||||| |||| |||||||  | ||||| ||| |||| || |||||||||||  ||||||||||||||||||||    
T  24545076 atcatttttgtgtcataaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataat 24545163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 45757575 - 45757512
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    ||||||||||||| |||| |   |||||||||||||| || |||||||||||||||| ||||||    
T  45757575 cttttactattatctggacttttgtcttatttgttatatggaaagattgcaacaggaaaatttt 45757512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 49369978 - 49369887
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | || || ||| | || || |||||||||||| ||||||||||||||||    
T  49369978 gagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagacttgctacaaagga 49369887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 4161989 - 4162043
Alignment:
Q  474 ttacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    |||| ||| ||||||||||||| |||||||| ||||||| |||| ||||||||||    
T  4161989 ttacattcaatttcgactatcccttttgaagacaaaatcctttatgttgtttaca 4162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 26996150 - 26996076
Alignment:
Q  33 aaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttg 107  Q
    |||||| || |||||||| | ||||| ||| |||| || |||||||||||| |||||| | ||||||||||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaaggataatttg 26996076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 41343140 - 41343201
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||| |||||||||||  ||| || |||||| |||| ||||| |||||    
T  41343140 tttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggatttt 41343201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 49369653 - 49369608
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaa 381  Q
    |||||||||||||| || | |||||||||||||| |||||||||||    
T  49369653 ctattatttggatttcgattttatttgttatttggaaagattgcaa 49369608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 7e-72; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 21 - 495
Target Start/End: Complemental strand, 17228135 - 17227655
Alignment:
Q  21 tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagata 120  Q
    ||||| ||||||||||| ||| |||||||  |||| || ||| |||| || |||||||| ||| |||||||||||||||| |||||| |||| || || |    
T  17228135 tttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaaggacaatttgcgcaaaag-ga-a 17228038  T
Q  121 tgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtga 220  Q
    ||| ||||||||||| | |||| |||| |||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||  |||||     
T  17228037 tgtccttgatgtttcacttgtgacttgcgcggccttgtgtggtgaggtagaggacagggaccatttgtttttcaagtgcgaccactacggtcggttgtgg 17227938  T
Q  221 cttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattc-------- 312  Q
     | |||||| |  ||||||||||||||||||| | ||| ||  | || |||||||||||| |  | ||||||| |||||||||| ||| |||            
T  17227937 ttcttgatctcacattggcttggtattgttacagttttacagcgcgatttaaatattcatcctaatcagttttctgctcttggaggcttttcaaaaaaaa 17227838  T
Q  313 taaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcag 412  Q
     |||| |||| | ||  |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||  ||||||||||| ||| | |||||| ||    
T  17227837 aaaaaactctagaacagcttttactattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattag 17227738  T
Q  413 tttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcc 495  Q
     ||||||  ||| |  ||| |||||||||| ||||||||||||||||||||||| ||| |||||| ||| |||| ||||||||    
T  17227737 cttgcagctcttcttaaaagggttaaactccaaacgtattggtggttgaaagcgaacttcattactttcaattttgactatcc 17227655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 528
Target Start/End: Complemental strand, 667155 - 666958
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    |||||||||||||||||||| |||||||||||||||| || |||||| |||||||||| ||||| || ||  | || ||||| |||| ||  ||| | ||    
T  667155 cttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcattttgaagctcttcttga 667056  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    ||  ||| ||||  |||  |||||||||||||||||  ||| ||| ||||||| ||| |||||||| ||||| ||  |||||||  || ||||||||||    
T  667055 aagcgtt-aacttcaaagatattggtggttgaaagcaaacttcatcacgttcgcttttgactatcccttttggagataaaatctactatgttgtttaca 666958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 28605217 - 28605283
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttca 396  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| ||||||||    
T  28605217 cttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacaggaggatttttca 28605283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 7218372 - 7218459
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttg 107  Q
    |||||| |||||||| |||||| |||||||| | || || ||| | || || || ||||||||| |||||||||||||||||||||||    
T  7218372 atttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttg 7218459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 474
Target Start/End: Complemental strand, 7578733 - 7578681
Alignment:
Q  422 cttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacat 474  Q
    ||||| ||||||||||||||| |||||||||||||||||| | || |||||||    
T  7578733 cttgttgaaaaggttaaactccaaacgtattggtggttgagatcgtactacat 7578681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 18295418 - 18295502
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||  | |||||  | ||||| ||| | || || |||||||||||| ||||||||||||||||||||    
T  18295418 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataat 18295502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 542
Target Start/End: Complemental strand, 12736621 - 12736507
Alignment:
Q  427 agaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttta 526  Q
    ||||||||||||| || ||| |||||||||||||||| || | ||||||  |||||| ||||| || |||||||| ||||  |||| |||| ||||| ||    
T  12736621 agaaaaggttaaattccaaatgtattggtggttgaaatcgtattacattttgttcga-ttcgattaccctttttggaggctgaatcctttatgttgtcta 12736523  T
Q  527 caaacttttgtgtaat 542  Q
     || || |||||||||    
T  12736522 gaagctattgtgtaat 12736507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 2894430 - 2894353
Alignment:
Q  27 tggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||||||| | |||||  | ||||| ||| | || || || ||||||||| ||||||||||||||||||||    
T  2894430 tggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaaggataat 2894353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 23659855 - 23659814
Alignment:
Q  422 cttgtagaaaaggttaaactctaaacgtattggtggttgaaa 463  Q
    |||| |||||||||||||||| ||||||||| ||||||||||    
T  23659855 cttggagaaaaggttaaactccaaacgtattagtggttgaaa 23659814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 667465 - 667385
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    |||||| |||||||||| |||| | |||||| | || || ||| | || || |||||||||||| ||||||||||||||||    
T  667465 atttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 143 - 525
Target Start/End: Complemental strand, 25135358 - 25134975
Alignment:
Q  143 tcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtgacttttgatcgcgaattggcttg 242  Q
    ||||||||||| |  ||||| |  ||||||||||  ||||||||||||||||||||||| ||||  ||||  ||||| |||||| || || |||||||||    
T  25135358 tcttgtgcggcttcttgtggggtattagaggacaaagaccatttgttttttaagtgcgatcactttggtcgattgtggcttttgttctcgcattggcttg 25135259  T
Q  243 gtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatctctgggaccactttt-actatta 341  Q
    |||||| |||   ||||||||| || ||||||||||||||  | ||||||   |||||  || | |  || ||||  ||  |||| |||||| |||||||    
T  25135258 gtattgatacaatttttcatggcgaattaaatattcattcaaatcagtttgacgctctctgaggtttctcaaaaaattcaaggacaacttttcactatta 25135159  T
Q  342 tttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaact 441  Q
    |||||||| | ||||||||||||||||| |||||| | ||||| ||| ||||||| ||| |  | |||||| |||||| |||| | |||||||||||||     
T  25135158 tttggatttcagtcttatttgttatttggaaagatcgtaacagtagagtttttcataatgacttggatcagcttgcagggcttctcgaaaaggttaaaca 25135059  T
Q  442 ctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    | |||| |||||||||||||||||| ||||||||| |||||| ||||| ||| ||||||| |||||||||| |||| |||||||    
T  25135058 ccaaacttattggtggttgaaagcgaactacattatgttcgacttcgagtattctttttggaggcaaaatcctttatgttgttt 25134975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 32 - 525
Target Start/End: Complemental strand, 24059831 - 24059340
Alignment:
Q  32 taaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagatatgtgcttgatg 131  Q
    |||| |||||||||||||  | ||||| ||| | ||||| |||||| ||| | |||||||||||||||| |||||| | | |||| |   || || ||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaatttgcggacgagacag--gttctggatg 24059734  T
Q  132 tttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtgacttttgatcgc 231  Q
    |||| || || |||||| |||| | |||||| |   ||||||| |  |||||||||||||||||||| || |||||||||| |||||| ||| ||||  |    
T  24059733 tttcacaggtatcttgtacggcttcatgtggggctgtagaggatagagaccatttgttttttaagtgtgatcactacggtcgtttgtggcttctgatatc 24059634  T
Q  232 gaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatctctgggaccact 331  Q
      ||||||||||||| | ||| | | ||||||| |||||| ||  ||||||  | |||||||  |||||| || | |  || || |  ||  ||||  |     
T  24059633 ccattggcttggtatcgatacagttcttcatggcgacttatatgctcattcaaatcagttttaagctcttagagggttctcaaagaattcaaggacatca 24059534  T
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    ||  |||||||||||||| |||||||||||||||| ||||||||  | ||||  ||||||||| | ||| |  |||||||| || |||  ||| | ||||    
T  24059533 ttctctattatttggatttcggtcttatttgttatctgaaaagaccgtaacaatagaattttttataatcattttgatcagcttacaggacttcttgaaa 24059434  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||| |||| |||||||    
T  24059433 aggttaaactccaaacatattggtggttgaaagcgaactacattacgttcgactttgactaccccttttgaaggcaaaatcctttatgttgttt 24059340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 532
Target Start/End: Complemental strand, 12915681 - 12915481
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    ||||||||||||| |||| ||||||||| |||||| || |||||| |||||||||||||||| || ||| |  |||||||  | | ||  ||| | ||||    
T  12915681 tttactattatttagatttcggtcttatatgttatatggaaagatcgcaacaggagaattttccaaaatcactttgatcatctagaagctcttatggaaa 12915582  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaaac 531  Q
     |||||||||  ||||||||||||||||||||||  ||| |||||| |||| ||| |||||||  ||||| || ||||||| |||  |||||||||||||    
T  12915581 gggttaaacttcaaacgtattggtggttgaaagcaaacttcattacattcgtttttgactatcacttttggagacaaaatcctttttgttgtttacaaac 12915482  T
Q  532 t 532  Q
    |    
T  12915481 t 12915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 543
Target Start/End: Complemental strand, 8111118 - 8110597
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagat 119  Q
    |||||| ||||||||||||||| | |||||| | ||||| ||| | || || |||||||||||| ||||||| |||||||| ||  || ||||||| ||     
T  8111118 atttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagag-ga- 8111021  T
Q  120 atgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtg 219  Q
    | ||  |||| |||||| |||||||||| |||||||| |||||| ||   ||||| | ||||||||| |||||| | || || || || ||||  || ||    
T  8111020 acgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaatgtgatcattatggtcgattatg 8110921  T
Q  220 acttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatc 319  Q
     || |||||  |||||||| |||||||||||| ||  ||||||||  |  ||  |   ||| |  | |||||||||||||||||| | |  || || |      
T  8110920 gctcttgatatcgaattggtttggtattgttaaggtgtttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaat 8110821  T
Q  320 tctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcag 419  Q
    ||| ||||  ||||||||||||| |||||| ||||||||||||||||||| || ||  |||||||||| |||||||| ||  |  |||| ||  | | ||    
T  8110820 tctaggacagcttttactattatatggatttcggtcttatttgttatttggaaggaccgcaacaggaggatttttcagaaccaagttgaacatctcgaag 8110721  T
Q  420 tgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttagg 519  Q
      ||| | |||| |||||||||  | || ||||||||| |||||||  ||| ||| || |||| ||| || ||||| ||||| || ||||||| ||||      
T  8110720 ctctttttgaaagggttaaacttcagacttattggtggctgaaagcagacttcatcactttcgcttttgattatcccttttggagacaaaatcctttaca 8110621  T
Q  520 ttgtttacaaacttttgtgtaatg 543  Q
    ||||||||| ||| ||||||||||    
T  8110620 ttgtttacagactgttgtgtaatg 8110597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 528
Target Start/End: Original strand, 29192646 - 29192843
Alignment:
Q  331 ttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaa 430  Q
    ||||||||||||||||||| |||| ||||| || ||||  |||||| | |||||||||||||||||  || |  ||||| |  ||| ||  ||  | |||    
T  29192646 ttttactattatttggatttcggttttattcgtcatttagaaagatagaaacaggagaatttttcagcatcattttgattatcttgaagctctacttgaa 29192745  T
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    | |||||||||| |||||| |||||||||||||||| | ||||| | ||||||||| |||||||| | ||| ||| |||||| ||||  |||||||||    
T  29192746 agggttaaactccaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccctattggaggaaaaatcctttactttgtttaca 29192843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 339 - 492
Target Start/End: Original strand, 50694093 - 50694246
Alignment:
Q  339 ttatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaa 438  Q
    ||||||||||| |||| ||||| || ||||| |||||| | ||||||||||||||||| ||| |  |||||||  ||| ||| ||| | |||| ||||||    
T  50694093 ttatttggatttcggttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaa 50694192  T
Q  439 actctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgacta 492  Q
    |||  |||||| ||||||| |||||||| | | ||||| ||||||||| |||||    
T  50694193 acttcaaacgttttggtggctgaaagcgaattgcattatgttcgattttgacta 50694246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 541
Target Start/End: Original strand, 15649396 - 15649608
Alignment:
Q  329 acttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtag 428  Q
    |||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | |    
T  15649396 actttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttg 15649495  T
Q  429 aaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    ||| ||| |||||  |||||| |||||||||||||||  |||||||   ||||| ||| || ||| ||| ||| |||||||| |  |||  |||||||||    
T  15649496 aaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttaca 15649595  T
Q  529 aacttttgtgtaa 541  Q
     ||| ||||||||    
T  15649596 gactattgtgtaa 15649608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 475
Target Start/End: Original strand, 6614370 - 6614509
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggt 435  Q
    |||||||||||||| |||||||||||  ||| || |||||| |||||| ||| |||||||| ||  | |||| ||| || | ||| ||| | |||| |||    
T  6614370 ctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 6614469  T
Q  436 taaactctaaacgtattggtggttgaaagcgcactacatt 475  Q
     |||||| |||||| |||||||||||||||  ||||||||    
T  6614470 caaactccaaacgttttggtggttgaaagctaactacatt 6614509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 12290684 - 12290638
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagat 376  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  12290684 cttttactattatttggatttcggtcttatttgttatttggaaagat 12290638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 23158480 - 23158543
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||||| ||||||||| |  ||| ||||||||| |||||||||| |||||    
T  23158480 cttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacaggaggatttt 23158543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 4303213 - 4303466
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgt 108  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | ||||| ||| | || || || ||||||||| |||||||||||||||| ||| |      
T  4303213 gagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatcttc 4303312  T
Q  109 gcaagagagatatgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactac 208  Q
    |||||||  |||  | ||| ||| | |  ||   |||||||||||||| |||||| ||   ||||| | |||||||||||||||| | || ||  | ||     
T  4303313 gcaagaggaata--tccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgattattat 4303410  T
Q  209 ggtcatttgtgacttttgatcgcgaattggcttggtattgttacggcttttcatgg 264  Q
    ||||  || ||||| |||||  |||||||||||||| |||||||||  ||||||||    
T  4303411 ggtcgattatgactcttgatatcgaattggcttggttttgttacggtgtttcatgg 4303466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 36279225 - 36279309
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||| | |||||  | ||||| ||| | || ||  ||||||||||| ||||||||||||||||||||    
T  36279225 atttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaaggataat 36279309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 51872885 - 51872801
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||  | |||||  | ||||| ||| | || || |||||||||||| ||||||||||||||||||||    
T  51872885 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaaggataat 51872801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 17826792 - 17826883
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    ||||||||||| ||||| |||||||||| |||||| |||||  | || || ||| | || || |||||||||||| ||||||||||||||||    
T  17826792 gagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 17826883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 36279533 - 36279596
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||||| ||||||||| |  ||| || |||||| |||||||||| |||||    
T  36279533 cttttactattatttggatttcggtcttatatactatatggaaagatcgcaacaggaggatttt 36279596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 13026363 - 13026322
Alignment:
Q  422 cttgtagaaaaggttaaactctaaacgtattggtggttgaaa 463  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  13026363 cttgcagaaaaggttaaactccaaacgtattggtggctgaaa 13026322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 501
Target Start/End: Original strand, 17469480 - 17469625
Alignment:
Q  356 ttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggt 455  Q
    ||||| || ||||| |||||| | ||||||||||||||||| ||| |  |||||||  ||| ||  ||| | |||| | |||||||  |||| | |||||    
T  17469480 ttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggt 17469579  T
Q  456 ggttgaaagcgcactacattacgttcgatttcgactatcctttttg 501  Q
    || |||||||| | ||||||| ||||||||| ||||| || |||||    
T  17469580 ggctgaaagcgaattacattatgttcgattttgactacccattttg 17469625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 18116714 - 18116775
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||| |||||||||||  ||| || |||||| |||| ||||| |||||    
T  18116714 tttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggatttt 18116775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 29123774 - 29123819
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaa 381  Q
    |||||||||||||| |||| |||||||||||||| |||||| ||||    
T  29123774 ctattatttggatttcggttttatttgttatttggaaagatcgcaa 29123819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 23158224 - 23158256
Alignment:
Q  72 ctctttctgaattgacttgctacaaaggataat 104  Q
    |||||||||||| ||||||||||||||||||||    
T  23158224 ctctttctgaatagacttgctacaaaggataat 23158256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 463
Target Start/End: Complemental strand, 40304650 - 40304622
Alignment:
Q  435 ttaaactctaaacgtattggtggttgaaa 463  Q
    |||||||||||||||||||||||||||||    
T  40304650 ttaaactctaaacgtattggtggttgaaa 40304622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 48547754 - 48547264
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagat 119  Q
    |||||| ||||||||||| ||| | |||||| | ||||| ||| |||| || |||||||||||| ||||||| |||||||| ||  || ||||||| ||     
T  48547754 atttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagag-ga- 48547657  T
Q  120 atgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtg 219  Q
    | || ||||| |||||| |||| ||||| |||||||| |||||| ||   ||||| | |||||||||||||||| | || || || || ||||  || ||    
T  48547656 acgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatg 48547557  T
Q  220 acttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatc 319  Q
     || |||||  |||||||| |||||||||||||||  | ||| ||  | |||| |   ||| |  | |||||||||||||||||| | |  || || |      
T  48547556 gctcttgatatcgaattggtttggtattgttacggtgtctcaaggcaatttaatttcacatgctaatcagttttgtgctcttggaggtttctcaaagaag 48547457  T
Q  320 tctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcag 419  Q
    ||| |||| |||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||| |||||||| ||  | ||||| ||  | | ||    
T  48547456 tctaggacaacttttactattatatggatttcggtcttatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcgaag 48547357  T
Q  420 tgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatc 512  Q
      ||| | |||| |||||||||  |||| |||||||||||||||||  ||| ||| ||||||| ||| || ||||||||||| || |||||||    
T  48547356 ctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttgattatcctttttggagacaaaatc 48547264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 189 - 532
Target Start/End: Complemental strand, 30737521 - 30737179
Alignment:
Q  189 tttttaagtgcgaccactacggtcatttgtgacttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaaca 288  Q
    ||||||| |||||||||||||| |  || || || |||||| || |||||||| |||||||||||  ||| ||||| || ||| |||  ||| |  | ||    
T  30737521 tttttaaatgcgaccactacggacggttatggctcttgatctcgcattggcttagtattgttacgattttacatggcgatttacatacacatgcgaatca 30737422  T
Q  289 gttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggaga 388  Q
    ||||||| |||||||| | |  || || | |||| |||| |||||||||||||| |||||| |||||||||||||||| ||||||||| |||| ||||||    
T  30737421 gttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgttatatgaaaagatcgcaagaggaga 30737322  T
Q  389 atttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcg 488  Q
    ||||| || ||| | ||||||||  ||| ||  ||| | |||| |||||||||  |||||||||||||||||||| || ||| ||| | ||||||||| |    
T  30737321 attttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttgaaatcgaacttcatcaggttcgatttag 30737222  T
Q  489 actatcctttttgaaggcaaaatcttttaggttgtttacaaact 532  Q
    | || || |||||||| ||||| |  | | ||||||||||||||    
T  30737221 atta-cccttttgaagacaaaacccctcatgttgtttacaaact 30737179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 332 - 528
Target Start/End: Original strand, 42459624 - 42459819
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||||||||||||||| ||||||||| |||||| || |||||| |||||||||||| |||||| ||| |  |||||||  ||| ||  ||| | | ||    
T  42459624 tttactattatttggatttcggtcttatatgttatatggaaagatcgcaacaggagaa-ttttcaaaatcattttgatcatcttgaagctcttatggtaa 42459722  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
     |||||||||  ||||||||||||||||||||||  |||  || ||||||| ||| |||| ||||||||| || ||||||| |||  ||||||||||    
T  42459723 gggttaaacttcaaacgtattggtggttgaaagcaaactttatcacgttcgtttttgactgtcctttttggagacaaaatcctttttgttgtttaca 42459819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 532
Target Start/End: Original strand, 39633122 - 39633364
Alignment:
Q  290 ttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaa 389  Q
    ||||||||||||||  | | ||| |||| |||| ||||   ||||||||||||||||||| |  | ||||| || ||||| |||||| | ||||| ||||    
T  39633122 ttttgtgctcttgggggtttttcgaaaaactctaggacaggttttactattatttggatttcaattttattcgtcatttggaaagatagaaacagcagaa 39633221  T
Q  390 tttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcga 489  Q
    |||||||  || |  |||||||  ||| ||  ||  | |||| |||||||||| |||||| |||||||||||||||| | ||||| | ||||||||| ||    
T  39633222 tttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagcgaattacatcatgttcgattttga 39633321  T
Q  490 ctatcctttttgaaggcaaaatcttttaggttgtttacaaact 532  Q
    |||||| | ||| |||||||||| ||||  |||||||||||||    
T  39633322 ctatccctattggaggcaaaatcctttactttgtttacaaact 39633364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 541
Target Start/End: Original strand, 53152415 - 53152626
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    ||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | ||    
T  53152415 ctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttga 53152514  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaa 529  Q
    || |||||||||| |||||| |||||||||||||||  |||||||   ||||| ||| || ||| ||| ||| |||||||| | ||||  |||||||||     
T  53152515 aagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacag 53152614  T
Q  530 acttttgtgtaa 541  Q
    ||| ||||||||    
T  53152615 actattgtgtaa 53152626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 512
Target Start/End: Complemental strand, 10753954 - 10753773
Alignment:
Q  331 ttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaa 430  Q
    ||||||||||||||||||| |||| |||||||| || || || ||| | ||||| |||||||||||  |  |  |||||||| ||| ||| ||| | |||    
T  10753954 ttttactattatttggatttcggttttatttgtcatatggaaggatagaaacagaagaatttttcagcaacaatttgatcagcttgaagttcttcttgaa 10753855  T
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatc 512  Q
    | |||||||||| | |||| |||||||||||||||| | |||||   ||||||||| |||||||||| ||| ||| ||||||    
T  10753854 agggttaaactccagacgttttggtggttgaaagcgaattacatcttgttcgattttgactatccttattggaggaaaaatc 10753773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 42462611 - 42462549
Alignment:
Q  331 ttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||    
T  42462611 ttttactattatttggatttcggtcttatttgttatttgaaaagatcgcaacatgaggatttt 42462549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 465
Target Start/End: Original strand, 17154139 - 17154272
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||||||||||||||| | |||||||||  ||| || ||||||||||||||||| ||||| || ||  | |||| ||| || | ||| ||| | ||||    
T  17154139 tttactattatttggatttcagtcttatttactatatggaaagattgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaa 17154238  T
Q  432 aggttaaactctaaacgtattggtggttgaaagc 465  Q
     ||| |||||| |||||| |||||||||||||||    
T  17154239 gggtcaaactccaaacgttttggtggttgaaagc 17154272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 525
Target Start/End: Complemental strand, 21383583 - 21383487
Alignment:
Q  428 gaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    ||||||||||||||| |||| ||||||| |||||||||| ||||| |||||||||| || || |||||  |||| |||||||||| |||| |||||||    
T  21383583 gaaaaggttaaactccaaacatattggtagttgaaagcgaactacgttacgttcgactttgagtatcc-ctttggaggcaaaatcatttatgttgttt 21383487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 17153818 - 17153913
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | ||||| ||||| || || |||||| ||||| ||||||||||||||||||||    
T  17153818 gagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaaaggataat 17153913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 541
Target Start/End: Complemental strand, 32945783 - 32945572
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    ||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | ||    
T  32945783 ctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttga 32945684  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaa 529  Q
    || ||| |||||| |||||| ||||||||||||||   |||||||   ||||| |||  | ||| ||| ||| || ||||| ||||||  |||||||||     
T  32945683 aagggtcaaactccaaacgttttggtggttgaaagttaactacatattgttcgttttttattattcttattggagacaaaaccttttaccttgtttacag 32945584  T
Q  530 acttttgtgtaa 541  Q
    ||| ||||||||    
T  32945583 actattgtgtaa 32945572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 25996747 - 25996841
Alignment:
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgttt 525  Q
    |||||||||||| |||  ||||| |||||||||||| ||||||| |||||| |||| ||||| || ||||  |||||||||| |||| |||||||    
T  25996747 aaggttaaactccaaatatattgatggttgaaagcgaactacataacgttcaattttgactaccccttttagaggcaaaatcatttatgttgttt 25996841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 524
Target Start/End: Complemental strand, 28393404 - 28393217
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggt 435  Q
    |||||||||||||| |||||||||||||||| || |||||  | ||| | ||||||||  | ||| |  |||||||| ||  ||  ||| | ||||||||    
T  28393404 ctattatttggatttcggtcttatttgttatctggaaagaccgtaacggtagaatttta-ataatcattttgatcagcttataggacttcttgaaaaggt 28393306  T
Q  436 taaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtt 524  Q
    ||| ||| |||  ||||| |||||||||||| |||||||||| ||| | || ||||||||  |||| || ||||||| |||| ||||||    
T  28393305 taagctccaaatatattgatggttgaaagcgaactacattacattcaactttgactatcccatttggagacaaaatcctttatgttgtt 28393217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 23571632 - 23571723
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | || || ||| | ||||| |||||||||||| ||||||||||||||||    
T  23571632 gagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaagga 23571723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 49764245 - 49764130
Alignment:
Q  359 tttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggt 458  Q
    ||||||||||| |||||| ||||||  |||||||| |||||| ||  ||||||  |||     ||||| ||||||||||||||| |||||||||||||||    
T  49764245 tttgttatttggaaagatcgcaacaacagaattttccacaataagtctgatcaaattgagactcttgttgaaaaggttaaactccaaacgtattggtggt 49764146  T
Q  459 tgaaagcgcactacat 474  Q
    ||| | || |||||||    
T  49764145 tgagatcgtactacat 49764130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 528
Target Start/End: Complemental strand, 8542299 - 8542199
Alignment:
Q  428 gaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttac 527  Q
    |||| |||||||||   ||||| |||||||||||||||  ||||||| ||||||| |||||| ||||| ||||| |  |||||||  ||| |||||||||    
T  8542299 gaaagggttaaacttcgaacgttttggtggttgaaagctaactacatcacgttcgctttcgattatcccttttggacacaaaatcccttatgttgtttac 8542200  T
Q  528 a 528  Q
    |    
T  8542199 a 8542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 512
Target Start/End: Complemental strand, 8595051 - 8594967
Alignment:
Q  428 gaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatc 512  Q
    ||||||||||||||  |||| | ||||||| ||||||| |||| |||||||||| |||| || ||||| ||||| || |||||||    
T  8595051 gaaaaggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaatc 8594967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 23603474 - 23603382
Alignment:
Q  9 ggagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    |||||||||||| ||||| ||||||||||||||| | |||||  | || || ||| | || ||||||||||||||| |||||||||| |||||    
T  23603474 ggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctactaagga 23603382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 48352757 - 48352809
Alignment:
Q  422 cttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacat 474  Q
    ||||| ||||||||||||||| |||||||||||||||||| | || |||||||    
T  48352757 cttgttgaaaaggttaaactccaaacgtattggtggttgagatcgtactacat 48352809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 3514576 - 3514513
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||||  ||||||||| |  |||||| |||||| |||||||||| |||||    
T  3514576 cttttactattatttggatctcggtcttatatactatttggaaagatcgcaacaggaggatttt 3514513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 492
Target Start/End: Complemental strand, 16663908 - 16663706
Alignment:
Q  290 ttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaa 389  Q
    ||||||||||||||| | |  || ||||| ||| ||||   ||||||  |||| |||||| | || ||||| || ||||| |||||| | ||||| ||||    
T  16663908 ttttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttattcgtcatttggaaagatagaaacagaagaa 16663809  T
Q  390 tttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcga 489  Q
    ||||||| ||| |  |||||||  ||| ||  ||| | |||| | |||||||  |||||| ||||||| |||||||| | ||||||| ||||||||| ||    
T  16663808 tttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgattttga 16663709  T
Q  490 cta 492  Q
    |||    
T  16663708 cta 16663706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 23571953 - 23572014
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||| |||| ||||||  ||| || |||||| |||||||||| |||||    
T  23571953 tttactattatttggatttcggtattattttctatatggaaagatcgcaacaggaggatttt 23572014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 9819260 - 9819176
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||| | |||||  | ||||| | | | || || || ||||||||| ||||||||||||||||||||    
T  9819260 atttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaaggataat 9819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 10754250 - 10754174
Alignment:
Q  33 aaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtg 109  Q
    ||||||||| |||| ||| | || |||||| | || || |||||| ||||| ||||||||||||| |||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaaagataatttgtg 10754174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 16664124 - 16664084
Alignment:
Q  72 ctctttctgaattgacttgctacaaaggataatttgtgcaa 112  Q
    |||||||||||| ||||||||||||| ||||||||| ||||    
T  16664124 ctctttctgaatagacttgctacaaaagataatttgcgcaa 16664084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 27891898 - 27891408
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagat 119  Q
    |||||| ||||||||||||||| | |||||| | ||||| ||| |||| |  |||||||||||| ||||||| |||||||| ||  || ||||||| ||     
T  27891898 atttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaacaaaggacaacctgcgcaagag-ga- 27891801  T
Q  120 atgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtg 219  Q
    | || ||| | |||||| |||||||||| |||||||| |||||| ||   ||||| | |||||||||||||||| | || || || || ||||  || ||    
T  27891800 acgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatg 27891701  T
Q  220 acttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatc 319  Q
     || |||||  |||||||| |||||||||||||||  ||||||||  |  ||  |   ||| |  | |||||||||||||||||| | |  || || |      
T  27891700 gctcttgatatcgaattggtttggtattgttacggtgtttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaag 27891601  T
Q  320 tctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcag 419  Q
    ||| ||||  ||||||||||||| ||||||  |||||||||||||||||| |||||| |||||||||| |||||||| ||  | ||||| ||  |   ||    
T  27891600 tctaggacatcttttactattatatggatttaggtcttatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcaaag 27891501  T
Q  420 tgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatc 512  Q
      ||| | |||| |||||||||  |||| |||||||||||||||||  ||| ||| ||||||| ||| |||||||| |||||||| |||||||    
T  27891500 ctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttgactatcccttttgaagacaaaatc 27891408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 330 - 541
Target Start/End: Original strand, 5825299 - 5825510
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    ||||| |||||||||||||| |||||||||||  |||||| |||||| |||||||||| |||||||| ||  | |||| |||  | | ||| ||| | ||    
T  5825299 ctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttga 5825398  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaa 529  Q
    || ||| |||||| |||||| |||||||||||||||  |||||||   ||||| |||  | ||| ||| ||| |||||||||| ||||  ||||||||||    
T  5825399 aagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggaggcaaaatcctttacattgtttacaa 5825498  T
Q  530 acttttgtgtaa 541  Q
    ||| ||||||||    
T  5825499 actattgtgtaa 5825510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 541
Target Start/End: Original strand, 6678906 - 6679117
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    ||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | ||    
T  6678906 ctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttga 6679005  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaa 529  Q
    || |||||||||| |||||| |||||||||||||||  |||||||   ||||| |||  | ||| ||| ||| |||||||||| ||||  |||||||||     
T  6679006 aagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggaggcaaaatcctttaccttgtttacag 6679105  T
Q  530 acttttgtgtaa 541  Q
    ||| ||||||||    
T  6679106 actattgtgtaa 6679117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 331 - 543
Target Start/End: Original strand, 31963003 - 31963215
Alignment:
Q  331 ttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaa 430  Q
    |||||||||||||| |||| ||||  ||||||| ||||| |||||  | |||||||||||||||||  || | ||||||||  | | ||  ||| | |||    
T  31963003 ttttactattatttcgatttcggtactatttgtcatttggaaagaccgaaacaggagaatttttcagcatcacattgatcatctagaagctcttcttgaa 31963102  T
Q  431 aaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaaa 530  Q
    | ||||||| || ||||||||||||||||||||||| | ||||| | ||| ||||| |||||||| ||||| | | |||| | ||||| ||||||| | |    
T  31963103 agggttaaaatccaaacgtattggtggttgaaagcgaattacatcatgtttgattttgactatcccttttggacgaaaaaccctttagtttgtttaaaga 31963202  T
Q  531 cttttgtgtaatg 543  Q
    || || |||||||    
T  31963203 ctgttttgtaatg 31963215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 11265917 - 11265851
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttca 396  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| ||||||||    
T  11265917 cttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacaggaggatttttca 11265851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 500
Target Start/End: Original strand, 16862873 - 16862948
Alignment:
Q  427 agaaaaggttaaa--ctctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatccttttt 500  Q
    |||||||||||||  ||| |||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||    
T  16862873 agaaaaggttaaaaactccaaacgtattgatggttgaaagcgcactacattatgttcaatttcgactatccctttt 16862948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 332 - 474
Target Start/End: Original strand, 10462469 - 10462611
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||||||||||||||| |||||||||||  ||| || |||||| |||| ||||| ||||| || ||  | |||| ||| || | ||| ||| | ||||    
T  10462469 tttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaa 10462568  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacat 474  Q
     |||||||||| |||||| |||||||||||||||  |||||||    
T  10462569 gggttaaactccaaacgttttggtggttgaaagctaactacat 10462611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 486
Target Start/End: Complemental strand, 38931701 - 38931505
Alignment:
Q  290 ttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaa 389  Q
    ||||||||||||||| | |  || |||| |||| ||||   ||||||  ||||||||||| |||| |||||  | ||||| |||||| | ||||||||||    
T  38931701 ttttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 38931602  T
Q  390 tttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgattt 486  Q
    ||||||| ||| |  |||||||  ||| ||  ||| | |||| |||||||||  |||||| |||||||||||||||| | ||||||  |||||||||    
T  38931601 tttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttcgattt 38931505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 11266225 - 11265993
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagat 119  Q
    |||||| ||||||||||||||| | |||||  | ||||| ||| | || || |||||||||||| |||||||||||||||| ||  |  ||||||| ||     
T  11266225 atttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag-ga- 11266128  T
Q  120 atgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtg 219  Q
    |||| ||||| | | |  |||| ||||| |||||||| |||||| ||   ||||| | |||||||||||||||| | || ||| | || ||||  || ||    
T  11266127 atgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgactattatggtcggttatg 11266028  T
Q  220 acttttgatcgcgaattggcttggtattgttacgg 254  Q
     || |||||  |||||||||||||| |||||||||    
T  11266027 gctcttgatttcgaattggcttggttttgttacgg 11265993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 6678589 - 6678682
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||| | |||  || |||||| ||| | ||  | |||||||||||| ||||||||||||||||||||    
T  6678589 gagtttgatcaatttttatggcttaaagcggttccttta--gaagaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataat 6678682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 5824980 - 5825075
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||  | |||||  | ||||| ||| | ||  | |||||||||||| ||||||||||||||||||||    
T  5824980 gagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataat 5825075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 16862772 - 16862824
Alignment:
Q  314 aaaatctctgggaccacttttactattatttggattgcggtcttatttgttat 366  Q
    |||| |||| |||| |||||||| |||||||||||| |||| |||||||||||    
T  16862772 aaaaactctaggacaacttttaccattatttggatttcggttttatttgttat 16862824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 287 - 528
Target Start/End: Original strand, 31423502 - 31423743
Alignment:
Q  287 cagttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacagga 386  Q
    |||||||||||||||||| | |  || || | |||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  31423502 cagttttgtgctcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacagga 31423601  T
Q  387 gaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgattt 486  Q
    | ||||| || ||  | ||||||||  | | ||  ||| | |||| |||||||||  |||| |||||||||||||||||  ||| ||  ||||||| |||    
T  31423602 ggattttccaaaaccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttt 31423701  T
Q  487 cgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
     |||||||| ||||| || |||||||  ||| ||||||||||    
T  31423702 tgactatcccttttggagacaaaatccattatgttgtttaca 31423743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 541
Target Start/End: Original strand, 2959919 - 2960131
Alignment:
Q  329 acttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtag 428  Q
    |||||| |||||||||||||| |||||||||||  |||||| |||||| | |||||||| |||||||| ||  | |||| |||  | | ||| ||| | |    
T  2959919 actttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttg 2960018  T
Q  429 aaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    ||| ||| |||||  |||||| |||||||||||||||| |||||||   ||||| ||| || ||| ||| ||| |||||||| |  |||  |||||||||    
T  2960019 aaagggtcaaacttcaaacgttttggtggttgaaagcgaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttaca 2960118  T
Q  529 aacttttgtgtaa 541  Q
    |||| ||||||||    
T  2960119 aactattgtgtaa 2960131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 26390565 - 26390634
Alignment:
Q  324 ggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||| ||||||||||||||||||| | | |||||||||||||| || |||||| ||||||||||||||||    
T  26390565 ggacaacttttactattatttggacttctgtcttatttgttatatggaaagatcgcaacaggagaatttt 26390634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 31423263 - 31423341
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaag 98  Q
    |||||| ||||||||||||||| | |||||| | ||||| ||| ||||||| |||||||||||| ||||||| ||||||    
T  31423263 atttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaacaaag 31423341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 29532557 - 29532471
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataattt 106  Q
    |||||| ||||||||||||||  | |||||  | || || ||| |||| || |||||||||||| |||||||||||||||| |||||    
T  29532557 atttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaattt 29532471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 10801754 - 10801791
Alignment:
Q  72 ctctttctgaattgacttgctacaaaggataatttgtg 109  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  10801754 ctctttctgaatagacttgctacaaaagataatttgtg 10801791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 18182172 - 18182104
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaat 400  Q
    ||||| |||||||| ||| |||| |||||||||||||| |||||| | |||| ||| ||||| ||||||    
T  18182172 tttaccattatttgaatttcggttttatttgttatttggaaagatcgtaacaagaggattttccacaat 18182104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 26077748 - 26077828
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaagga 100  Q
    |||||| ||||||||||||||  | |||||  | ||||| ||| | || || |||||||||||| ||||||||||||||||    
T  26077748 atttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagga 26077828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 528
Target Start/End: Original strand, 58418 - 58924
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagat 119  Q
    |||||| ||||||||||||||| | |||||| | || || ||| | || || |||||||||||| |||||||||||||||| ||  |  ||||||| ||     
T  58418 atttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag-ga- 58515  T
Q  120 atgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtg 219  Q
    |||| ||||| | | || || | |||||||||||||| |||||| ||   ||||| | ||||| |||||||||| | || ||| | || ||||  || ||    
T  58516 atgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttttttcaatgtgacaattatggtcggttatg 58615  T
Q  220 acttttgatcgcgaattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatc 319  Q
     || |||||  | |||||||||||| |||||||||  ||||| |   | |||||||  ||| |  | |||||||||||||||||| | |  || || | |    
T  58616 gctcttgatatcaaattggcttggttttgttacggtgtttcacgacaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaac 58715  T
Q  320 tctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcag 419  Q
     ||  ||   |||||||||||||||||||| |||||||||||||||| || |||||| |||||||||| ||||| || ||  | || |||||  ||| ||    
T  58716 gctatgatagcttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcatcttgaag 58815  T
Q  420 tgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttagg 519  Q
      ||| | |||| |||||||||  |||| |||||||||||||||||  ||| ||| || |||| ||| |||||||| ||||| || |||||||  ||| |    
T  58816 ctcttcttgaaagggttaaacttcaaacatattggtggttgaaagcaaacttcatcactttcgcttttgactatcccttttggagacaaaatcccttatg 58915  T
Q  520 ttgtttaca 528  Q
    |||||||||    
T  58916 ttgtttaca 58924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 528
Target Start/End: Original strand, 33937107 - 33937303
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||| ||||||||||| |||| ||||| || ||||| |||||| | ||||||||||||||||| ||| |  |||||||  ||| ||  ||  | ||||    
T  33937107 tttactgttatttggatttcggttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctctccttgaaa 33937206  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
     |||||||||| ||||||||||||||||||||||| | ||||| | ||||||||| |||||||| | ||| ||  |||||| ||||| |||||||||    
T  33937207 gggttaaactccaaacgtattggtggttgaaagcgaattacatcatgttcgattttgactatccctattggagaaaaaatcctttagcttgtttaca 33937303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 332 - 543
Target Start/End: Complemental strand, 22298802 - 22298591
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||| | ||||||||| ||||  |||| || || ||||||||||| ||||||||||||||||| ||| |  |||||||  ||| ||  ||  | ||||    
T  22298802 tttactgtcatttggatttcggttatattcgtcatatgaaaagattgaaacaggagaatttttcaaaatcactttgatcatcttgaagctctccttgaaa 22298703  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaaac 531  Q
     |||||||||| ||||||||||||||||||||||| | ||||| | ||| ||||| |||||||| | ||| ||| |||||| ||||| ||||||||| ||    
T  22298702 gggttaaactccaaacgtattggtggttgaaagcgaattacatcatgtttgattttgactatccctattggaggaaaaatcctttagtttgtttacagac 22298603  T
Q  532 ttttgtgtaatg 543  Q
    | || |||||||    
T  22298602 tgttttgtaatg 22298591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 528
Target Start/End: Complemental strand, 1258393 - 1258154
Alignment:
Q  290 ttttgtgctcttggaagctattctaaaatctctgggaccacttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaa 389  Q
    ||||||||||||||| | | ||| |||| |||| |||| |  |||||| ||||||||||| |||| |||||  | ||||| |||||| | ||||||||||    
T  1258393 ttttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttattcttcatttggaaagatagaaacaggagaa 1258294  T
Q  390 ttttt-cacaattagattgatcagtttgcagtgcttgtagaaaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcg 488  Q
    ||||| || ||| |  |||||||  ||| ||  ||  | |||| |||||||||| ||| ||||||||||||||||||| | ||||| | | ||||||| |    
T  1258293 ttttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggttgaaagcgaattacatcatgctcgattttg 1258194  T
Q  489 actatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    ||||||| | ||| ||| |||||| ||||| |||||||||    
T  1258193 actatccctattggaggaaaaatcctttagtttgtttaca 1258154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 541
Target Start/End: Complemental strand, 21963300 - 21963089
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    ||||| |||||||||||||| |||||||||||  |||||| |||||| |||||||||| |||||||| ||  | |||| |||  | | ||| ||| | ||    
T  21963300 ctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttga 21963201  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttacaa 529  Q
    || ||| |||||| |||||| |||||||||||||||  |||||||   ||||| ||| || ||| ||| ||| |||||||| | ||||  |||||||||     
T  21963200 aagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttacattgtttacag 21963101  T
Q  530 acttttgtgtaa 541  Q
    ||| ||||||||    
T  21963100 actattgtgtaa 21963089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 30275782 - 30275719
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttt 393  Q
    |||||||||||||||||||| ||||||||| |  ||| ||||||||| ||||||||||||||||    
T  30275782 cttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacaggagaatttt 30275719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 332 - 474
Target Start/End: Original strand, 27914933 - 27915075
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||||||||||||||| |||||||||||  ||| || |||||| |||||||||| ||||| || ||  | |||| ||| ||   ||| ||| | ||||    
T  27914933 tttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttgaaagttcttcttgaaa 27915032  T
Q  432 aggttaaactctaaacgtattggtggttgaaagcgcactacat 474  Q
     ||| |||||| |||||| |||||||||||||||  |||||||    
T  27915033 gggtcaaactccaaacgttttggtggttgaaagctaactacat 27915075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 38938364 - 38938311
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaaca 383  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||| ||||||    
T  38938364 cttttactattatttggatttctgtcttatttgttatttggaaagatcgcaaca 38938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 23385054 - 23384959
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | ||||| ||| | || || |||||||||||| ||| ||||||||||||||||    
T  23385054 gagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaaaggataat 23384959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 474
Target Start/End: Complemental strand, 23384729 - 23384591
Alignment:
Q  336 ctattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaaaggt 435  Q
    |||||||||||||| |||||||||||  ||| || ||||||  ||||||||| |||||||| ||  | |||| ||| || | ||| ||| | |||| |||    
T  23384729 ctattatttggatttcggtcttatttactatatggaaagatcacaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 23384630  T
Q  436 taaactctaaacgtattggtggttgaaagcgcactacat 474  Q
     |||||| ||| || |||||||||||||||  |||||||    
T  23384629 caaactccaaatgttttggtggttgaaagctaactacat 23384591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 21963619 - 21963524
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||  | |||||  | ||||| ||| | ||  | |||||||||||| ||||||||||||||||||||    
T  21963619 gagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataat 21963524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 21964804 - 21964709
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||  | |||||  | ||||| ||| | ||  | |||||||||||| ||||||||||||||||||||    
T  21964804 gagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaaggataat 21964709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 38938683 - 38938588
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    ||||||||||| ||||| ||||||||||||||| | ||||| || || || ||| | || || |||||||||||| ||||| |||||||||| |||    
T  38938683 gagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaat 38938588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 1258609 - 1258572
Alignment:
Q  72 ctctttctgaattgacttgctacaaaggataatttgtg 109  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  1258609 ctctttctgaatagacttgctacaaaagataatttgtg 1258572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 22300916 - 22300871
Alignment:
Q  67 gacgactctttctgaattgacttgctacaaaggataatttgtgcaa 112  Q
    |||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  22300916 gacgtctctttctgaatagacctgctacaaaggataatttgcgcaa 22300871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30276089 - 30276005
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataat 104  Q
    |||||| ||||||||||||||| | |||||  | ||||| ||| | ||  | |||||||||||| |||| |||||||||||||||    
T  30276089 atttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaaggataat 30276005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 330 - 528
Target Start/End: Complemental strand, 74190 - 73992
Alignment:
Q  330 cttttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtaga 429  Q
    |||||||||||||||||||| |||||||||||  ||| || |||||| |||||||||| ||||| || ||  | ||||||||  | | ||  ||| | ||    
T  74190 cttttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttga 74091  T
Q  430 aaaggttaaactctaaacgtattggtggttgaaagcgcactacattacgttcgatttcgactatcctttttgaaggcaaaatcttttaggttgtttaca 528  Q
    || |||||||||  |||||| |||||||||||||||  ||||||| ||||||| ||| |||||||| ||||| || |||||||  ||| ||||||||||    
T  74090 aagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaaaatcccttatgttgtttaca 73992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 74509 - 74256
Alignment:
Q  10 gagtttgatca-tttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgt 108  Q
    ||||||||||| ||||| ||||||||||||||| | |||||  | || || ||| | || || |||||||||||| |||||||||||||||| ||  |      
T  74509 gagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttc 74410  T
Q  109 gcaagagagatatgtgcttgatgtttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactac 208  Q
    ||||||| || |||| ||||| | | || |||| ||||||| |||||| |||||| ||   ||||| |||||||||||||||||  | || ||  | ||     
T  74409 gcaagag-ga-atgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattat 74312  T
Q  209 ggtcatttgtgacttttgatcgcgaattggcttggtattgttacggcttttcatgg 264  Q
    ||||| || || ||||||||  | |||||||||||| ||||||| |  ||||||||    
T  74311 ggtcagttatggcttttgatatcaaattggcttggttttgttacagtgtttcatgg 74256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 375
Target Start/End: Complemental strand, 11252 - 10912
Alignment:
Q  33 aaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttgtgcaagagagatatgtgcttgatgt 132  Q
    |||| |||| |||||||| | ||||| ||| | ||| | ||||| |||||| ||||| |||||||||||||| || | |||||| ||  || || |||||    
T  11252 aaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagagaaat--gttctagatgt 11155  T
Q  133 ttcccatgtgtcttgtgcggccttatgtggtgagttagaggacatggaccatttgttttttaagtgcgaccactacggtcatttgtgacttttgatcgcg 232  Q
     ||||  || |||| || ||| | |||||  || |||||||||||  ||||||||||||||||||| || || ||||||| |||||| ||||||||| |     
T  11154 ctccctggtatcttatgtggcttcatgtgtggatttagaggacataaaccatttgttttttaagtgtgatcattacggtcgtttgtggcttttgatctcc 11055  T
Q  233 aattggcttggtattgttacggcttttcatggtgacttaaatattcattccgaacagttttgtgctcttggaagctattctaaaatctctgggaccactt 332  Q
     ||||||||||||| | ||| | | ||||||| || ||| ||| ||||||  | || ||||||||||||||| | |  || ||||  ||  | || ||||    
T  11054 cattggcttggtatcgatacagttcttcatggcgatttatataatcattcaaatcaattttgtgctcttggaggtttatcaaaaaattcaagtacaactt 10955  T
Q  333 ttactattatttggattgcggtcttatttgttatttgaaaaga 375  Q
    |  |||||||||||||| ||||||||| |||||| || |||||    
T  10954 tctctattatttggatttcggtcttatctgttatctggaaaga 10912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 465
Target Start/End: Original strand, 225056 - 225189
Alignment:
Q  332 tttactattatttggattgcggtcttatttgttatttgaaaagattgcaacaggagaatttttcacaattagattgatcagtttgcagtgcttgtagaaa 431  Q
    |||||||| ||||||||| |||| ||||||||||| || |||||| |||| |||||||| ||||| ||  || ||| |||  ||| ||  ||| | ||||    
T  225056 tttactatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaa 225155  T
Q  432 aggttaaactctaaacgtattggtggttgaaagc 465  Q
    ||||||||||  ||||||||||||| ||||||||    
T  225156 aggttaaacttcaaacgtattggtgattgaaagc 225189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 224748 - 224835
Alignment:
Q  20 atttttctggcttaaagcggtttcgttaaagatgaatatctttatctgacgactctttctgaattgacttgctacaaaggataatttg 107  Q
    |||||| |||||||| |||||| |||||||| | || || ||| | || || || ||||||||| |||||||||||||||| ||||||    
T  224748 atttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttg 224835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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