View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_32 (Length: 228)
Name: NF11849_low_32
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_32 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 15164471 - 15164250
Alignment:
| Q |
7 |
gagctacaatacatttgaattgagtctaacagtaaatttcacaaacagtttgtgttcattcaaaatagaagaaaactgtgatacacattagttttagtta |
106 |
Q |
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| T |
15164471 |
gagctacaatacatttgaattaagtctaacagtaaatttcacaaacagtttgtgttcattcaaaatagaagaaaactgtgatacacattagttttagtta |
15164372 |
T |
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| Q |
107 |
cctgcggaagaagcatcatggagtttgcgggacgagagaatcagattccatgaagacgatgttctgcgaaagttttgtaatttgtttaggcaaaaggcgc |
206 |
Q |
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| T |
15164371 |
cctgcggaagaagcatcatggagtttgcgggacgagagaatcagattccatgaagacgatgttctgcgaaagttttgtaatttttttaggcaaaaggcgc |
15164272 |
T |
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| Q |
207 |
gcatcttattctttcagctgca |
228 |
Q |
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| T |
15164271 |
gcatcttattctttcagctgca |
15164250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 15172254 - 15172131
Alignment:
| Q |
65 |
ttcaaaatagaagaaaactgtgatacacattagttttagttacctgcggaagaagcatcatggagtttgcgggacgagagaatcagattccatgaa---g |
161 |
Q |
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| T |
15172254 |
ttcaatatagaagaaaactgagatacacattagttttagatacctgtgggagaaacatcatggagtttgcgagacgagagaatcaggttccatgaaaatg |
15172155 |
T |
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| Q |
162 |
acgatgttctgcgaaagttttgta |
185 |
Q |
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| T |
15172154 |
atgatgttctgggaaagttttgta |
15172131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 15168097 - 15168014
Alignment:
| Q |
50 |
aacagtttgtgttcattcaaaatagaagaaaactgtgatacacattagttttagttacctgcggaagaagcatcatggagtttg |
133 |
Q |
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| T |
15168097 |
aacagttggtgttcattcaatatagaagaaaactgagatacacattagttttagatacctgtggaagaagcatcatggagtttg |
15168014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 29709244 - 29709074
Alignment:
| Q |
16 |
tacatttgaattgagtctaacagtaaatttcacaaacagtttgtgttcattcaaa-atagaagaaaactgtgatacacattagttttagttacctgcgga |
114 |
Q |
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| T |
29709244 |
tacatttgaattgagtacaacagtaaatttcacaaacagtcggtgttcattataatatagaagaaaactaagatacgcattagttttagatacctgtgga |
29709145 |
T |
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| Q |
115 |
agaagcatcatggagtttgcgggacgagagaatcagattccatgaagacgatgttctgcgaaagttttgta |
185 |
Q |
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| T |
29709144 |
agaagcatcatggagtttgcgggaggagagaatcaggttccatgaagatgatgttctgcgaaagttttgta |
29709074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 55806499 - 55806598
Alignment:
| Q |
86 |
gatacacattagttttagttacctgcggaagaagcatcatggagtttgcgggacgagagaatcagattccatgaagacgatgttctgcgaaagttttgta |
185 |
Q |
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| T |
55806499 |
gatacgcattagttttagatacctgtagaagaagcatcatggagtttgcgggaggagagaatcaggttccatgaagatgatgttctgcgaaagttttgta |
55806598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 55809818 - 55809868
Alignment:
| Q |
16 |
tacatttgaattgagtctaacagtaaatttcacaaacagtttgtgttcatt |
66 |
Q |
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| T |
55809818 |
tacatttgaattgagtataacagtaaatttcacaaacagtcggtgttcatt |
55809868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 55806413 - 55806448
Alignment:
| Q |
16 |
tacatttgaattgagtctaacagtaaatttcacaaa |
51 |
Q |
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| T |
55806413 |
tacatttgaattgagtctaacagtcaatttcacaaa |
55806448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 1522057 - 1521993
Alignment:
| Q |
122 |
tcatggagtttgcgggacgagagaatcagattccatgaagacgatgttctgcgaaagttttgtaa |
186 |
Q |
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| T |
1522057 |
tcatggagtttgcgggacaagagaatagggttccatgaaaatgatgttttgcgaatgttgtgtaa |
1521993 |
T |
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