View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_4 (Length: 511)
Name: NF11849_low_4
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 309 - 463
Target Start/End: Original strand, 27972260 - 27972414
Alignment:
| Q |
309 |
caagtattacttctaataatacaagaaattcatctcacaaaagagagacacaattacacaaacaatcaaaatatgcataacagacagactcttaatccag |
408 |
Q |
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| T |
27972260 |
caagtattacttctaataatacaacaaattcatatcacagaagagagacacaattacacaaacaatcaaaatatgcataacagacagactcttaatccag |
27972359 |
T |
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| Q |
409 |
gaaaccatactgtgtccgtaagagaataacttaataacaattcagggcataataa |
463 |
Q |
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| T |
27972360 |
gaaaccatactgtgtccgtaagagaataacttaataacaattcagggcataataa |
27972414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 27972115 - 27972206
Alignment:
| Q |
164 |
gaggaatagggtccaaacaaataaaaattcaatacaaaattgattaatttagacatgaaatagtgaccgtcaaacaaattgcaacgaatatg |
255 |
Q |
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| T |
27972115 |
gaggaatagggtccaagcaaataaaaattcaatacaaaattgattaatttagacatgaaatagtgaccgtcaaacaaattgcaacgaatatg |
27972206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 27971955 - 27972045
Alignment:
| Q |
17 |
aaggtccctggccaacaccactagaccaatccaagtgattttagtacatcctaaacttaagtgtatgacaggaaatttagacgagcgatgt |
107 |
Q |
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| T |
27971955 |
aaggtccctggccaacaccaccagaccaatccaagtgattttagtacatcctaaacttaagtgtatgacaggaaatttagacgagcgatgt |
27972045 |
T |
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