View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_5 (Length: 501)
Name: NF11849_low_5
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 237 - 456
Target Start/End: Complemental strand, 34382641 - 34382422
Alignment:
| Q |
237 |
caagcaatacatctcaatttgtctatctaagagagctaatttgataaagggaagcaaaatgtaaacatagagagctacacatttatctcctaatccatta |
336 |
Q |
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| T |
34382641 |
caagcaatacatctcaatttgtctatctaagagagctaatttgataaagggaagcaaaatgtaaacatagagagctacacatttatctcctaatccatta |
34382542 |
T |
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| Q |
337 |
actatctctaacagcttttctcacattttgagtttcatgtcaatctgtctttcttctttaccggttcctttttccaatttttacatatgtttcaagtact |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
34382541 |
actatctctaacagcttttctcacattttgagtttcatgtcaatctgtctttcttctttactggttcctttttccaatttttacatatgttttaagtact |
34382442 |
T |
|
| Q |
437 |
accaacctttcacaatttct |
456 |
Q |
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||| |||||||||||||||| |
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| T |
34382441 |
accgacctttcacaatttct |
34382422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 34382876 - 34382689
Alignment:
| Q |
1 |
caagatttatcttcctaatgcaccatagacttgatcatattaatattgagtttttcgttgagtagaatcaaatagttcttaatacccccacaattatcgt |
100 |
Q |
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| T |
34382876 |
caagatttatcttcctaatgcaccatagacttgatcatattaatattgagtttttcgttgagtagaatcaaatagttcttaatacccc-acaattatcgt |
34382778 |
T |
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| Q |
101 |
tatagatgaaccaataaaaaactcttaactaaccacttaagtactaaaaaatatagttatacccttttcaatgctcaaagagattcgac |
189 |
Q |
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| T |
34382777 |
tatagatgaaccaataaaaaactcttaactaaccacttaagtactaaaaaatatagttatacccttttcaatgctcaaagagattcgac |
34382689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 34366766 - 34366617
Alignment:
| Q |
2 |
aagatttatcttcctaatgcaccatagacttgatcatattaatattgagtttttcgttgagtagaatcaaatagttcttaatacccccacaattatcgtt |
101 |
Q |
| |
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||||||||| ||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| || ||||||| | ||| |
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| T |
34366766 |
aagatttattttc-tagtgcatcatagacttgatcatattaatattgagttttttattgagtagaatcaaaaaattcttaata-cctcacaattgtagtt |
34366669 |
T |
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| Q |
102 |
atagatgaaccaat--aaaaaactcttaactaaccacttaagtactaaaaaa |
151 |
Q |
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| T |
34366668 |
atagatgaaccaataaaaaaaactcttaacgaaccacttaagtactaaaaaa |
34366617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 284 - 411
Target Start/End: Complemental strand, 34368076 - 34367951
Alignment:
| Q |
284 |
agggaagcaaaatgtaaacatagagagctacacatttatctcctaatccattaactatctctaacagcttttctcacattttgagtttcatgtcaatctg |
383 |
Q |
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| T |
34368076 |
agggaagcaaaatgtaaacaaagagagctgcacatttatatcttaatccattaaccatctctaacaggttttctcaca--ttgagtttcatgtcaatttg |
34367979 |
T |
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| Q |
384 |
tctttcttctttaccggttcctttttcc |
411 |
Q |
| |
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|||||||||||||| | ||||||||||| |
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| T |
34367978 |
tctttcttctttactgtttcctttttcc |
34367951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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