View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_7 (Length: 450)
Name: NF11849_low_7
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 9607845 - 9607412
Alignment:
| Q |
1 |
gaagtagagtgtatttgagattaatagaaaacattacaatgatatacaaaagacagagggtaaagggaatatgttccatgtataaaaatgtgagagattt |
100 |
Q |
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| T |
9607845 |
gaagtagagtgtatttgagattaatagaaaacattacaatgatatacaaaagacagagggtaaagggaatgtgttccatgtataaaaatgtgagagattt |
9607746 |
T |
|
| Q |
101 |
atttagatgatatattttgtctgagactgaattgggtcgcttccaaattttgagagatcaaattaagtcttaaatcaaattttattttttcatatccata |
200 |
Q |
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| T |
9607745 |
atttagatgatatattttgtctgagactgaattgggtcgcttccaaattttgagagatcaaattaagtcttaaatcaaattttattttttcatatccata |
9607646 |
T |
|
| Q |
201 |
aattcggtttctgattagtaaaatagcaattataacnnnnnnnnncacgactaataagaaaagttgtatctca-----aatatacgtctatgttactaaa |
295 |
Q |
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| T |
9607645 |
aattcggtttctgattagtaaaatagcaattgtaac---aaaaaacacgactaataagaaaagttgtatctcaaatataatatacgtctatgttactaaa |
9607549 |
T |
|
| Q |
296 |
ttatcattagttatagatatattcaatgttaacatttaagagttaatatagttattttggccctaaatgcgtaacgagtagccacaacaatctttgaatg |
395 |
Q |
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| T |
9607548 |
ttatcattagttatagatatattcaatgttaacatttaagagtta--atagttattttggccctaaatatgtaacgagtagccacaacaatctttgaatg |
9607451 |
T |
|
| Q |
396 |
tatccaaattctaaaacagtcactaattgtgcattttct |
434 |
Q |
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| T |
9607450 |
tatccaaattctaaaacagtcactgattgtgcattttct |
9607412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 9572437 - 9572493
Alignment:
| Q |
356 |
ccctaaatgcgtaacgagtagccacaacaatctttgaatgtatccaaattctaaaac |
412 |
Q |
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| T |
9572437 |
ccctaaatgcgtaacgagtaatcagaatagtctttcaatgtatcgaaattctaaaac |
9572493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 18970312 - 18970268
Alignment:
| Q |
367 |
taacgagtagccacaacaatctttgaatgtatccaaattctaaaa |
411 |
Q |
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| T |
18970312 |
taacgagtagccacaatagtccttgaatgtatccaaattcaaaaa |
18970268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 26293372 - 26293445
Alignment:
| Q |
344 |
tagttattttgg-ccctaaatgcgtaacgagtagccacaacaatctttgaatgtatccaaattctaaaacagtc |
416 |
Q |
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| T |
26293372 |
tagttattttggtccctaaatgtgtaacaagtaaccacaataatcttttaatatattaaaattctaaaatagtc |
26293445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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