View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_low_8 (Length: 442)
Name: NF11849_low_8
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 33789943 - 33789523
Alignment:
| Q |
1 |
tcttctttcatgaatgatggttgcaatctatgtagcatcaacaattcacatttaagtcatgtctggtgtccaagacgtgtcagtgttggacaccaacacg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33789943 |
tcttctttcatgaacgatggttgcaatctatgtagcatcgacaattcacatttaagtcatgtctggtgtccaagatgtgtcagtgttggacaccaacacg |
33789844 |
T |
|
| Q |
101 |
agaccgacacatgtggttatattccgttattctattttctcatgttatttatggtgctgaggtgtcggtgtcgcacctggtgtctgtgtcggtgcttcat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33789843 |
agaccgacacatgtggttatattccgctattctattttctcatgttatttatggtgctgaggtgtcggtgttgcacctggtgtctgtgtcggtgcttcat |
33789744 |
T |
|
| Q |
201 |
agattgcaattcattttatttcttgttctccctttttgtggaatcttttgaacttacattacttttatattatattggaaatggaaatctacagggtaga |
300 |
Q |
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| T |
33789743 |
aggttgcaattcatttcatttcgagttctccctttttgtggaatcttttgaacttacattacttttatattatattggaaatggaaatctacagggtaga |
33789644 |
T |
|
| Q |
301 |
taattcttggatagtattgagggataaacttcacccctctgaaggaacaagtgttaagtcagctgaaaatgttccttcaacttcattggtaactnnnnnn |
400 |
Q |
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| T |
33789643 |
taattcttggatagtattgagggataaacttcacccctctgaaggaacaagtgttaagtcagctgaaaatgttccttcaacttcattggtaactaaaata |
33789544 |
T |
|
| Q |
401 |
nggaagaactctcaatcctct |
421 |
Q |
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| T |
33789543 |
aggaagaactctcaatcctct |
33789523 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 31572614 - 31572677
Alignment:
| Q |
60 |
tgtctggtgtccaagacgtgtcagtgttggacaccaacacgagaccgacacatgtggttatatt |
123 |
Q |
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| T |
31572614 |
tgtctgatgtctaacacgtgtaagtgtttgacaccaacacaacaccgacacatgtgattatatt |
31572677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 32908476 - 32908379
Alignment:
| Q |
45 |
ttcacatttaagtcatgtctggtgtccaagacgtgtcagtgttggacaccaacacgagaccgacacatgtggttatattccgttattctattttctca |
142 |
Q |
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|||| ||| |||||||||| ||||||| | ||||| |||| || ||||||| || ||||||||| ||||||| |||| |||||||||||||||| |
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| T |
32908476 |
ttcagattgaagtcatgtcctatgtccaacatgtgtctgtgtctgataccaacatgacaccgacacacgtggttacattcaattattctattttctca |
32908379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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