View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11850_high_15 (Length: 355)
Name: NF11850_high_15
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_high_15 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 29 - 343
Target Start/End: Complemental strand, 27508739 - 27508425
Alignment:
| Q |
29 |
tatcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
27508739 |
tatcaaaagtaagaaggatgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttat |
27508640 |
T |
|
| Q |
129 |
ctcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctac |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27508639 |
ctcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctac |
27508540 |
T |
|
| Q |
229 |
cttcttacacaatgtccaatacaaagcttccacttcctaccaaatgagatgtccttcataattttgtaaacatgctgaagacatgttttcttcattatga |
328 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27508539 |
cttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgtccttcataattttataaacatgctgaagacatgttttcttcattatga |
27508440 |
T |
|
| Q |
329 |
caatgctgatgtcca |
343 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27508439 |
caatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 27503794 - 27503544
Alignment:
| Q |
30 |
atcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatc |
129 |
Q |
| |
|
|||||| |||||| |||||||| |||||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
27503794 |
atcaaatgtaagatggatgtaattaagtatttgatgatgc-aatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatc |
27503696 |
T |
|
| Q |
130 |
tcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
27503695 |
tcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagatcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacc |
27503596 |
T |
|
| Q |
230 |
-ttcttacacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
280 |
Q |
| |
|
||| || ||||||||||||||||||||||||||| ||| |||| |||||| |
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|
| T |
27503595 |
tttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgt |
27503544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 27524394 - 27524146
Alignment:
| Q |
31 |
tcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatct |
130 |
Q |
| |
|
||||| ||| ||||||||||||||| || ||||| | || |||||||| | |||||||||||||||||| ||||| ||| |||||| ||| ||||| ||| |
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|
| T |
27524394 |
tcaaatgtatgaaggatgtaactaaatatttgataatgc-aatgagtttttctgtttgtgaaggagagaggaagtttatatatagattttaaagttctct |
27524296 |
T |
|
| Q |
131 |
caaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacct |
230 |
Q |
| |
|
|||| || |||| | ||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27524295 |
caaacccaaatttcaagaaaaactattattgaaggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttagagtgtaccctacct |
27524196 |
T |
|
| Q |
231 |
tcttacacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
280 |
Q |
| |
|
||||| ||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27524195 |
tcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgt |
27524146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 280
Target Start/End: Original strand, 27468624 - 27468855
Alignment:
| Q |
50 |
aactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcctagaa |
149 |
Q |
| |
|
|||||| || ||||||| || |||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| |||||||| | |||| | | || |
|
|
| T |
27468624 |
aactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagtgtatttatagattttgaagttctctcaaaatcaaatttcaacaa |
27468723 |
T |
|
| Q |
150 |
aaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttacac-aatgtccaat |
248 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||||| |
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|
| T |
27468724 |
aaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaat |
27468823 |
T |
|
| Q |
249 |
acaaagcttccacttcctaccaaatgagatgt |
280 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
27468824 |
acaaagcttccacttgctaccaaatgagatgt |
27468855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 27475853 - 27476088
Alignment:
| Q |
46 |
atgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcct |
145 |
Q |
| |
|
|||||||||| || ||||||| || ||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||||| |||| | |
|
|
| T |
27475853 |
atgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttca |
27475952 |
T |
|
| Q |
146 |
agaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacc-ttcttacacaatgtc |
244 |
Q |
| |
|
||| ||||||||||||||||| | || |||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
27475953 |
agagaaactattattgaagggtttgatggatagagagcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtc |
27476052 |
T |
|
| Q |
245 |
caatacaaagcttccacttcctaccaaatgagatgt |
280 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
27476053 |
caatacaaagcttccacttgctaaaaaataagatgt |
27476088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 27514736 - 27514505
Alignment:
| Q |
49 |
taactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcctaga |
148 |
Q |
| |
|
||||||| || ||||||| || ||||||||||||| || ||||||||||| |||||||||||||||| ||||||||| ||||| |||| |||| | ||| |
|
|
| T |
27514736 |
taactaaatacttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaaga |
27514639 |
T |
|
| Q |
149 |
aaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttacac-aatgtccaa |
247 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
27514638 |
gaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaa |
27514539 |
T |
|
| Q |
248 |
tacaaagcttccacttcctaccaaatgagatgtc |
281 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
27514538 |
tacaaagcttccacttgctaccaaatgagatgtc |
27514505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 27524104 - 27524041
Alignment:
| Q |
280 |
tccttcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
343 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27524104 |
tccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 27514471 - 27514410
Alignment:
| Q |
282 |
cttcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
343 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27514471 |
cttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 27468899 - 27468957
Alignment:
| Q |
282 |
cttcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgt |
340 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27468899 |
cttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgt |
27468957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 27503499 - 27503442
Alignment:
| Q |
286 |
ataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
343 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 27506324 - 27506263
Alignment:
| Q |
282 |
cttcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
343 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| | | |||||||||||| |
|
|
| T |
27506324 |
cttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 27489684 - 27489628
Alignment:
| Q |
287 |
taattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
343 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
27489684 |
taattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 27556962 - 27557006
Alignment:
| Q |
284 |
tcataattttgtaaacatgctgaagacatgttttcttcattatga |
328 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatga |
27557006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 27476133 - 27476187
Alignment:
| Q |
286 |
ataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgt |
340 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgt |
27476187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 27517475 - 27517383
Alignment:
| Q |
171 |
aaggatagagagcatagtgataaggtagcatgtggtgttgtctta-gagtgtaccctaccttcttacacaatgtccaatacaaagcttccactt |
263 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||| ||||||||| || ||||||| ||||||| | |||||| |||| ||||||||||||||| |
|
|
| T |
27517475 |
aaggttagagagcataa-gataatatagcatgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccactt |
27517383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 27486460 - 27486524
Alignment:
| Q |
282 |
cttcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccatct |
346 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||||||||| | | || |||||||||||| |
|
|
| T |
27486460 |
cttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 27497858 - 27497908
Alignment:
| Q |
291 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtc |
341 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 27479400 - 27479461
Alignment:
| Q |
282 |
cttcataattttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
343 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||||||||| | |||||||||||| |
|
|
| T |
27479400 |
cttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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