View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11850_high_17 (Length: 334)

Name: NF11850_high_17
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11850_high_17
NF11850_high_17
[»] chr4 (2 HSPs)
chr4 (223-334)||(49653217-49653328)
chr4 (2-159)||(49652994-49653153)
[»] chr5 (2 HSPs)
chr5 (2-33)||(6770549-6770580)
chr5 (4-36)||(22423836-22423868)
[»] chr6 (4 HSPs)
chr6 (2-36)||(8389494-8389528)
chr6 (2-32)||(9658886-9658916)
chr6 (2-32)||(32511688-32511718)
chr6 (2-42)||(31384917-31384957)
[»] chr3 (4 HSPs)
chr3 (2-32)||(32429402-32429432)
chr3 (6-39)||(2052738-2052771)
chr3 (2-31)||(7614437-7614466)
chr3 (2-30)||(4469859-4469887)
[»] chr8 (3 HSPs)
chr8 (2-31)||(4786360-4786389)
chr8 (2-31)||(11803267-11803296)
chr8 (2-34)||(14134704-14134736)
[»] chr2 (1 HSPs)
chr2 (2-35)||(18622610-18622643)
[»] chr7 (1 HSPs)
chr7 (4-32)||(36297369-36297397)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 49653217 - 49653328
Alignment:
Q  223 gtgaaatgagagagtagaatgaatgagtgatattgaagtggcagagaaaagcaacagaaggagcagtgtgttcttgggtcattgtcacattatactactt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49653217 gtgaaatgagagagtagaatgaatgagtgatattgaagtggcagagaaaagcaacagaaggagcagtgtgttcttgggtcattgtcacattatactactt 49653316  T
Q  323 tggtacccatct 334  Q
    ||||||||||||    
T  49653317 tggtacccatct 49653328  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 49652994 - 49653153
Alignment:
Q  2 actgaattatgtgattttcttaaattattagtagtatcaacgtttcagtgtaattnnnnnnnnnn--cgtatcaatgtccatgtcatgttcgatattcat 99  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||            ||||||  |||| ||||| ||||||||||||||    
T  49652994 actgaattatctgattttcttaaattattagtagtataaacgtgtcaatgtaattcaaaaaaaaaaccgtatcggtgtctatgtcgtgttcgatattcat 49653093  T
Q  100 gtccgtacagtagtttatagtaaccgagtgagtaatgagttgaactgtataaaagcttta 159  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49653094 gtccgtacagtagtttatagtaactgagtgagtaatgagttgaactgtataaaagcttta 49653153  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 6770580 - 6770549
Alignment:
Q  2 actgaattatgtgattttcttaaattattagt 33  Q
    ||||||||||||||||||||||||||||||||    
T  6770580 actgaattatgtgattttcttaaattattagt 6770549  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 22423836 - 22423868
Alignment:
Q  4 tgaattatgtgattttcttaaattattagtagt 36  Q
    |||||||||||||||||| ||||||||||||||    
T  22423836 tgaattatgtgattttctcaaattattagtagt 22423868  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 8389494 - 8389528
Alignment:
Q  2 actgaattatgtgattttcttaaattattagtagt 36  Q
    |||||||||| ||||||||||||||||||||||||    
T  8389494 actgaattatatgattttcttaaattattagtagt 8389528  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 9658916 - 9658886
Alignment:
Q  2 actgaattatgtgattttcttaaattattag 32  Q
    |||||||||||||||||||||||||||||||    
T  9658916 actgaattatgtgattttcttaaattattag 9658886  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 32511688 - 32511718
Alignment:
Q  2 actgaattatgtgattttcttaaattattag 32  Q
    |||||||||||||||||||||||||||||||    
T  32511688 actgaattatgtgattttcttaaattattag 32511718  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31384957 - 31384917
Alignment:
Q  2 actgaattatgtgattttcttaaattattagtagtatcaac 42  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  31384957 actgaattatgtgattttttcaaattattagttgtatcaac 31384917  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 32429402 - 32429432
Alignment:
Q  2 actgaattatgtgattttcttaaattattag 32  Q
    |||||||||||||||||||||||||||||||    
T  32429402 actgaattatgtgattttcttaaattattag 32429432  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 2052771 - 2052738
Alignment:
Q  6 aattatgtgattttcttaaattattagtagtatc 39  Q
    |||||| |||||||||||||||||||||||||||    
T  2052771 aattatatgattttcttaaattattagtagtatc 2052738  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 7614437 - 7614466
Alignment:
Q  2 actgaattatgtgattttcttaaattatta 31  Q
    ||||||||||||||||||||||||||||||    
T  7614437 actgaattatgtgattttcttaaattatta 7614466  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4469887 - 4469859
Alignment:
Q  2 actgaattatgtgattttcttaaattatt 30  Q
    |||||||||||||||||||||||||||||    
T  4469887 actgaattatgtgattttcttaaattatt 4469859  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 4786360 - 4786389
Alignment:
Q  2 actgaattatgtgattttcttaaattatta 31  Q
    ||||||||||||||||||||||||||||||    
T  4786360 actgaattatgtgattttcttaaattatta 4786389  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 11803296 - 11803267
Alignment:
Q  2 actgaattatgtgattttcttaaattatta 31  Q
    ||||||||||||||||||||||||||||||    
T  11803296 actgaattatgtgattttcttaaattatta 11803267  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 14134736 - 14134704
Alignment:
Q  2 actgaattatgtgattttcttaaattattagta 34  Q
    |||||||||||||||||||| ||||||||||||    
T  14134736 actgaattatgtgattttctcaaattattagta 14134704  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 18622643 - 18622610
Alignment:
Q  2 actgaattatgtgattttcttaaattattagtag 35  Q
    |||||||||||||||||| |||||||||||||||    
T  18622643 actgaattatgtgattttattaaattattagtag 18622610  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 36297369 - 36297397
Alignment:
Q  4 tgaattatgtgattttcttaaattattag 32  Q
    |||||||||||||||||||||||||||||    
T  36297369 tgaattatgtgattttcttaaattattag 36297397  T

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