View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_high_23 (Length: 252)
Name: NF11850_high_23
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 39489005 - 39488857
Alignment:
| Q |
48 |
cttctagctacacctacaagagcatgggcagctttgttcttacatcttttaacagcaacaacacttacatttaataaactaaccaaaatgtctaaacagt |
147 |
Q |
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| T |
39489005 |
cttctagctacacctacaagagcatgggcagctttgttcttacatcttttaacagcaacaacacttatatttaataaactaaccaaaatgtctaaacagt |
39488906 |
T |
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| Q |
148 |
caacaataataaaatcaatttcaacacagttcagctttcccataataca |
196 |
Q |
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| T |
39488905 |
caacaataatgaaatcaatttcaacacagttcatcttccccataataca |
39488857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 39494227 - 39494178
Alignment:
| Q |
8 |
aggagcagagacattcccaatccattccttagtacctactcttctagcta |
57 |
Q |
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| T |
39494227 |
aggatcagggacattcccaatccattccttagtacctacacttctagcta |
39494178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 46035075 - 46034976
Alignment:
| Q |
100 |
cagcaacaacacttacatttaataaactaaccaaaatgtctaaacagtcaacaataataaaatcaatttcaacacagttcagctttcccataatacagtt |
199 |
Q |
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| T |
46035075 |
cagcaacaacacttacatttaataaactaactaaaatgtctaaacagtcaacaataataaaatcaatttcaacacagttcatcttccccataatacagtt |
46034976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 46035143 - 46035072
Alignment:
| Q |
8 |
aggagcagagacattcccaatccattccttagtacctactcttctagctacacctacaagagcatgggcagc |
79 |
Q |
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| T |
46035143 |
aggatcagggacattcccaatccattccttagtacctacacttctagctacacctacaagagcatgggcagc |
46035072 |
T |
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