View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_high_27 (Length: 237)
Name: NF11850_high_27
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_high_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 35392399 - 35392619
Alignment:
| Q |
14 |
ctttcatcttgattccagcagcaacagaaaccaaaagcttatccttagtaagaagtggcttcaatttcaaaacaacatccttcactgnnnnnnnnnnnnn |
113 |
Q |
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| T |
35392399 |
ctttcatcttgattccagcagcaacagaaaccaaaagcttatccttagtaagaagtggcttcaatttcaaaacaacatccttcactgcaacaacaacaac |
35392498 |
T |
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| Q |
114 |
nnnnnnnnaactcatcagtaaaaccacgacgcttctttcataaacgacactgaaattctgaaacagagaaatacataattgcggtttaaccgagaagacg |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35392499 |
aacaa---aactcatcagtaaaacgacgacgcttctttcataaacgacactgaaattctgaaacagagaaatacataattgcggtttaaccgagaagacg |
35392595 |
T |
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| Q |
214 |
acgacgttactatcacgaacaacc |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
35392596 |
acgacgttactatcacgaacaacc |
35392619 |
T |
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