View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11850_high_5 (Length: 550)

Name: NF11850_high_5
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11850_high_5
NF11850_high_5
[»] chr6 (2 HSPs)
chr6 (7-537)||(17433637-17434167)
chr6 (110-537)||(17454840-17455267)
[»] chr4 (7 HSPs)
chr4 (235-508)||(38238266-38238537)
chr4 (316-537)||(38214390-38214614)
chr4 (339-501)||(38248454-38248616)
chr4 (328-508)||(38226829-38227008)
chr4 (372-508)||(38220491-38220627)
chr4 (359-508)||(38253589-38253738)
chr4 (372-508)||(38243339-38243475)
[»] chr1 (1 HSPs)
chr1 (13-71)||(44477880-44477938)
[»] chr8 (2 HSPs)
chr8 (13-71)||(12519983-12520043)
chr8 (11-71)||(1311485-1311545)
[»] chr5 (1 HSPs)
chr5 (19-71)||(26072158-26072210)
[»] chr7 (1 HSPs)
chr7 (7-71)||(22786194-22786258)


Alignment Details
Target: chr6 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 7 - 537
Target Start/End: Original strand, 17433637 - 17434167
Alignment:
Q  7 actttcttattaggtgaaatctatgtgagtctcaccattttatgtgaaattcatttccaaagtgttaagagagtgtgacaaagaaatgaactagtgttat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433637 actttcttattaggtgaaatctatgtgagtctcaccattttatgtgaaattcatttccaaagtgttaagagagtgtgacaaagaaatgaactagtgttat 17433736  T
Q  107 gtttgtgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaatgaccgttagatcaa 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433737 gtttttgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaatgaccgttagatcaa 17433836  T
Q  207 gttcagacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttataaattcttcgattttgatccaacaatcactg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17433837 gttcagacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttatgaattcttcgattttgatccaacaatcactg 17433936  T
Q  307 attcattcactgtatgaatgcagggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatc 406  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433937 attcattcactgcatgaatgcagggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatc 17434036  T
Q  407 tgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17434037 tgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccat 17434136  T
Q  507 ttgattttgtatttcagatagatacttctct 537  Q
    |||||||||||||||||||||| ||||||||    
T  17434137 ttgattttgtatttcagatagagacttctct 17434167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 110 - 537
Target Start/End: Original strand, 17454840 - 17455267
Alignment:
Q  110 tgtgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaatgaccgttagatcaagtt 209  Q
    ||||||||||||||||||| ||||||||||| |||| | |||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||||||    
T  17454840 tgtgaaagtgagattgaaataaattataaatattgactacttgtagtctagagactttacgttcacccaatcaacatatcaatgactattagatcaagtt 17454939  T
Q  210 cagacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttataaattcttcgattttgatccaacaatcactgatt 309  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | || | | || ||||||||||||||||||||||     
T  17454940 cagacgattctagattccaaactcggtattttggatttaaaaacaatcaaaatttgtatattttgtgaactttccggttttgatccaacaatcactgatc 17455039  T
Q  310 cattcactgtatgaatgcagggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatctga 409  Q
    |||||| ||  |||||||| |||||||||||||| ||||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  17455040 cattcagtgcgtgaatgcatggtatcccaactacgcggaatccattttcacaaacaacaagatttttgatgaaatcatttaccttacaatcatgatctga 17455139  T
Q  410 gttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccatttg 509  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||| |||||||    
T  17455140 gttcattccttttgaatcatctgatagtttcaaactatcagtaacatcaattatgtatgtcttaagaggaactataaattcatcccaatcaacccatttg 17455239  T
Q  510 attttgtatttcagatagatacttctct 537  Q
    ||||||||||||||||| | ||||||||    
T  17455240 attttgtatttcagataaagacttctct 17455267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 235 - 508
Target Start/End: Original strand, 38238266 - 38238537
Alignment:
Q  235 gtattttggatttaaaaacaatcaaaatatgtgtattttataaattcttcgattttgatccaacaat-cactgattcattcactgtatgaatgcagggta 333  Q
    ||||||||||||| | ||||||| |||| ||| |||||| | |||| |  |||  |||||||||| | |||||||  ||| | ||  ||||||||||| |    
T  38238266 gtattttggattttagaacaatcgaaatctgtatattttgtgaattgtctgatcctgatccaacagtacactgatggattgattgcgtgaatgcagggca 38238365  T
Q  334 tcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttga 433  Q
    |||||||||||||||| ||||||| |||||||   || ||| | |||||  |||||||||| || ||||||||||||||| |||||||||||| || |||    
T  38238366 tcccaactacacggaacccatttcgacaaaca---tgtttcgtaatgaatgcatttaccttgcagtcatgatctgagttcattccttttgaattatctga 38238462  T
Q  434 tagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccattt 508  Q
    |||||| ||| ||||||||||||||| ||| |||  |||||||||||||||||||||||||||||||| ||||||    
T  38238463 tagtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccattt 38238537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 316 - 537
Target Start/End: Original strand, 38214390 - 38214614
Alignment:
Q  316 ctgtatgaatgcagggtat---cccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatctgagtt 412  Q
    |||| ||||||||||||||   |||||||||| |||||||||||| |||||| ||  | ||||||||||| ||||||||||| ||||||||||| |||||    
T  38214390 ctgtgtgaatgcagggtattctcccaactacatggaatccatttccacaaactactagtttcttgatgaattcatttaccttgcaatcatgatccgagtt 38214489  T
Q  413 cgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccatttgatt 512  Q
    |  |||||||||||||| |||| |||| ||||||||||||||||||||||| |||  ||| |||||||| ||||||||||||||||| | |||||| |      
T  38214490 caatccttttgaatcatctgatggtttcaaactatcagtaacatcaattatatatatcttcacaggcacaataaaatcatcccaatcgacccattttaca 38214589  T
Q  513 ttgtatttcagatagatacttctct 537  Q
     ||||| | ||||||| ||||||||    
T  38214590 gtgtatcttagatagagacttctct 38214614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 339 - 501
Target Start/End: Original strand, 38248454 - 38248616
Alignment:
Q  339 actacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagtt 438  Q
    ||||||||||||| ||||| |||||| | ||| |||||||||||  |||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||    
T  38248454 actacacggaatctatttccacaaactaaatgtttcttgatgaatgcatttaccttgcaatcatgatctgatttcattccttttgaatcatctgatagtt 38248553  T
Q  439 ttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaa 501  Q
    | |||||| |||| ||||||||||| |||  |||||| |||||||||||||||||||||||||    
T  38248554 tcaaactaccagtgacatcaattatatatatcttaacgggcactataaaatcatcccaatcaa 38248616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 328 - 508
Target Start/End: Original strand, 38226829 - 38227008
Alignment:
Q  328 agggtatcccaactacacggaatccatttcaacaaacaacatgattcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatc 427  Q
    |||||| ||||||||||||||||| ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||||| | |||||||  ||||||||||||    
T  38226829 agggtagcccaactacacggaatctatttctaaaaacta-atgtttcttaatgaattcatttaccttgcaatcatggtttgagttcaatccttttgaatc 38226927  T
Q  428 atttgatagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccattt 508  Q
    || |||| |||| ||| ||||||||||||||| ||| |||  |||||||||||||||||||||||||||||||| ||||||    
T  38226928 atctgatggtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccattt 38227008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 372 - 508
Target Start/End: Original strand, 38220491 - 38220627
Alignment:
Q  372 ttcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgcct 471  Q
    ||||||||||| |  |||||||| |||||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||||||||||| ||| |||  ||    
T  38220491 ttcttgatgaatttgtttaccttgcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatct 38220590  T
Q  472 taacaggcactataaaatcatcccaatcaatccattt 508  Q
    || ||||||||||||||||||||||||||| ||||||    
T  38220591 tagcaggcactataaaatcatcccaatcaacccattt 38220627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 359 - 508
Target Start/End: Original strand, 38253589 - 38253738
Alignment:
Q  359 acaaacaacatgattcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatca 458  Q
    |||||| | ||| ||||| ||||| | | ||||||| |||||||| |||||||||  | |||||||||||| |||| |||| ||| ||||||||||||||    
T  38253589 acaaactaaatgtttcttaatgaatttacttaccttgcaatcatggtctgagttcaattcttttgaatcatctgatggtttcaaagtatcagtaacatca 38253688  T
Q  459 attatgtatgccttaacaggcactataaaatcatcccaatcaatccattt 508  Q
    ||||| |||  |||||||||||||||||||||||||||||||| ||||||    
T  38253689 attatatatatcttaacaggcactataaaatcatcccaatcaacccattt 38253738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 372 - 508
Target Start/End: Original strand, 38243339 - 38243475
Alignment:
Q  372 ttcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgcct 471  Q
    ||||||||||| ||||||||||| |||||||||||  |||||||||||||||| | || |||| |||| | |||||| |||||||||||||  |||  ||    
T  38243339 ttcttgatgaattcatttaccttgcaatcatgatcaaagttcgttccttttgagttatctgattgtttcatactatcggtaacatcaattacatatatct 38243438  T
Q  472 taacaggcactataaaatcatcccaatcaatccattt 508  Q
    ||| |||||||||||||||||||||||||| ||||||    
T  38243439 taagaggcactataaaatcatcccaatcaacccattt 38243475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 44477938 - 44477880
Alignment:
Q  13 ttattaggtgaaatctatgtgagtctcaccattttatgtgaaattcatttccaaagtgt 71  Q
    ||||||| | ||| ||||| ||||||| ||||||||||||||||||||||| |||||||    
T  44477938 ttattagataaaacctatgcgagtctcgccattttatgtgaaattcatttctaaagtgt 44477880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 12519983 - 12520043
Alignment:
Q  13 ttattaggtgaaatctatgtgagtctca--ccattttatgtgaaattcatttccaaagtgt 71  Q
    ||||||||||||||| ||||||||||||  ||| ||||||||| ||||||||| |||||||    
T  12519983 ttattaggtgaaatccatgtgagtctcaagccactttatgtgagattcatttcgaaagtgt 12520043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 1311485 - 1311545
Alignment:
Q  11 tcttattaggtgaaatctatgtgagtctcaccattttatgtgaaattcatttccaaagtgt 71  Q
    ||||||| ||||||| | ||| | ||||||||||||||||||  || ||||||||||||||    
T  1311485 tcttattgggtgaaacccatgcgggtctcaccattttatgtgggatccatttccaaagtgt 1311545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 26072158 - 26072210
Alignment:
Q  19 ggtgaaatctatgtgagtctcaccattttatgtgaaattcatttccaaagtgt 71  Q
    ||||||||| ||||  ||||||||| |||||||| ||||||||||||||||||    
T  26072158 ggtgaaatcaatgtatgtctcaccactttatgtggaattcatttccaaagtgt 26072210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 22786194 - 22786258
Alignment:
Q  7 actttcttattaggtgaaatctatgtgagtctcaccattttatgtgaaattcatttccaaagtgt 71  Q
    ||||| ||||||||||||||| ||||  ||||||||| ||||||||   | ||||||||||||||    
T  22786194 acttttttattaggtgaaatcaatgtatgtctcaccactttatgtgggttccatttccaaagtgt 22786258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University