View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_high_8 (Length: 471)
Name: NF11850_high_8
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 35393048 - 35392641
Alignment:
| Q |
10 |
gcacagatgacacttgttgaaagatttactgtaaagtataaacaaaacaaaac-----tccatcactgtatctgtccc---actcaactacttcactgat |
101 |
Q |
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| T |
35393048 |
gcacagatgacacttgttgaaagatttactgtaaagtataaacaaaacaaaacaaaactccatcactgtatctgcgtgggaactcaactacttcactgat |
35392949 |
T |
|
| Q |
102 |
tcattcctctctctatcccttaaaccaaacatggaaatcattccgatccccgccgattcctacacactcggtttcatcggcgccggtaaaatggccgaaa |
201 |
Q |
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| T |
35392948 |
tcattcctctctctatcccttaaaccaaacatggaaatcattccgatccccgccgattcctacacactcggtttcatcggcgccggtaaaatggccgaaa |
35392849 |
T |
|
| Q |
202 |
gcattgccaaaggcgccgtccgctctggcgtcttatccccttctcgcatcaaaaccgccatccactctaaccccgctcgccgtaccgccttcgagtccat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35392848 |
gcattgccaaaggcgccgtccgctctggcgtcttatccccttctcgcatcaaaaccgccatccactctaaccccgctcgccgtaccgccttcgagtccat |
35392749 |
T |
|
| Q |
302 |
cggcatcaccgtcctttcttcaaacgacgacgtattattcattccctctcaattgtttcactatttattacaactgcgttgcgttttcctattatcattt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35392748 |
cggcatcaccgtcctttcttcaaacgacgacgtattattcattccctctcaattgtttcactatttattacaactgcgttgcgttttccttttatcattt |
35392649 |
T |
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| Q |
402 |
tctcattc |
409 |
Q |
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|||||||| |
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| T |
35392648 |
tctcattc |
35392641 |
T |
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