View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11850_low_1 (Length: 742)
Name: NF11850_low_1
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 14 - 731
Target Start/End: Complemental strand, 33810691 - 33809973
Alignment:
| Q |
14 |
tcatcactacccccctcaaagctatgtcatacaaatgccaagttatggcatgccagtgcaacaaccttatgctcctcctcatcctcaatatatcagcacc |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810691 |
tcataactacccccctcaaagctatgtcatacaaatgccaagttatggcatgccagtgcaacaaccttatgctcctcctcatcctcaatatatcagcacc |
33810592 |
T |
|
| Q |
114 |
agtttaaggg-tgatcaccccaaggacacactaatggtcaactcgtctttgccgttgtcttgatgatcctggaatctgtaaggatcgtgtagtagattca |
212 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810591 |
agttcaaggggtgatcaccccaaggacacaccaatggtcaactcgtctttgccgttgtcttgatgatcctggaatctgtaaggatcgtgtagtagattca |
33810492 |
T |
|
| Q |
213 |
ttcactttctttaaaacacatatatattatggttaattacnnnnnnnnccttctaattgacaaggtttggtcacttgcttctgcccttgtgttacttttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810491 |
ttcactttctttaaaacacatatatattatggttaattacttttttttccttctaattgacaaggtttggtcacttgcttctgcccttgtgttacttttg |
33810392 |
T |
|
| Q |
313 |
gaatgatagcagagatagtagacaaaggcaattcaagtaagtaagcattttatataaaatttaggaaaaattaatcttgtggtcccttaacttaatttgg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810391 |
gaatgatagcagagatagtagacaaaggcaattcaagtaagtaagc-ttttatataaaatttaggaaaaattaatcttgtggtcccttaacttaatttgg |
33810293 |
T |
|
| Q |
413 |
tttatgcagcttgcacatgtgatggaacaatttatggggcgttactggctatgacaggacttgcatgtttatattcatgttattatcgatccaaactaag |
512 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
33810292 |
tatatgcagcttgcacatgtgatggaacaatttatggggcgctactggctgtgactggacttgcatgtttatattcatgttattatcggtccaaactgag |
33810193 |
T |
|
| Q |
513 |
ggcacaatatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgcgaaacttgtgctctttatcaggaatatagagaactcaaaaac |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33810192 |
ggcacaatatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgtgaaacttgtgctctttgtcaggaatatagagaactcaaaaac |
33810093 |
T |
|
| Q |
613 |
cgtggatatgacatgagcataggtacctaattcttttttgtctaattttcaagttgggtttctaacttaaattttttatatactg-aaggttagattttt |
711 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33810092 |
cgtggatatgacttgagcataggcacctaattcttttttgtctaattttcaagttgggtttttaacttaaattttttatatactgaaaggttagattttt |
33809993 |
T |
|
| Q |
712 |
agtgaatttgtctgatgtcc |
731 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33809992 |
agtgaatttgtctgatgtcc |
33809973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 408 - 648
Target Start/End: Complemental strand, 33815206 - 33814966
Alignment:
| Q |
408 |
tttggtttatgcagcttgcacatgtgatggaacaatttatggggcgttactggctatgacaggacttgcatgtttatattcatgttattatcgatccaaa |
507 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33815206 |
tttggtatatgcagcttgcacctgtgatggaacaatttatggggcgctactggctgtgactggacttgcatgtttatattcatgttattatcggtccaaa |
33815107 |
T |
|
| Q |
508 |
ctaagggcacaatatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgcgaaacttgtgctctttatcaggaatatagagaactca |
607 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
33815106 |
ctgagggcacaatatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgtgaaacttgtgctctttgtcaggaatatagagagctca |
33815007 |
T |
|
| Q |
608 |
aaaaccgtggatatgacatgagcataggtacctaattcttt |
648 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33815006 |
aaaaccgtggatatgacttgagcataggtacctaattcttt |
33814966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 29 - 410
Target Start/End: Complemental strand, 33815892 - 33815525
Alignment:
| Q |
29 |
tcaaagctatgtcatacaaatgccaagttatggcatgccagtgcaacaaccttatgctcctcctcatcctcaatatatcagcaccagtttaagggtgatc |
128 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
33815892 |
tcaaggctatgtcctacaaatgccaagttatggcatgccagtgcaacaaccttatgctcctcc---------atatatcagcaccagttcaaggggcatc |
33815802 |
T |
|
| Q |
129 |
accccaaggacacactaatggtcaactcgtctttgccgttgtcttgatgatcctggaatctgtaaggatcgtgtagtagattcattcac-tttctttaaa |
227 |
Q |
| |
|
||||| ||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
33815801 |
---ccaagaacacatcactggtcaactggtctttgccgttgtcttgatgatccaggaatctgtaagaatcatgtagtagattcattcacctttctttaaa |
33815705 |
T |
|
| Q |
228 |
acacatatatattatggttaattacnnnnnnnncctt-ctaattgacaaggtttggtcacttgcttctgcccttgtgttacttttggaatgatagcagag |
326 |
Q |
| |
|
|||| ||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33815704 |
-cacaaatatattatggttaattactttttttccttttctaattgaataggtttggtcacttgcttctgcccttgtgttacttttggattgatagcagag |
33815606 |
T |
|
| Q |
327 |
atagtagacaaaggcaattcaagtaagtaagcattttatataaaatttaggaaaaattaatcttgtggtcccttaacttaattt |
410 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
33815605 |
atagtggataaaggcaattcaagtaagtaagc-ttttctataaaatttaggcaaaattaa--ttgtgttctcttaacttaattt |
33815525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University