View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_10 (Length: 439)
Name: NF11850_low_10
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 44882422 - 44882832
Alignment:
| Q |
18 |
caagtgtgatcaaatgcaatgctcttgaatgatgacataaattgatgagccactaaattcaagtcttggacctattttcattaatttactcgaaccacac |
117 |
Q |
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| T |
44882422 |
caagtgtgatcaaatgcaatgctcttgaatgatgacataaattgatgagccactaaattcaagttttggacctattttcattaatttactcgaaccacac |
44882521 |
T |
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| Q |
118 |
gttcgcgtgctaatagaacttgtacatactagtatataatataataaataaaaactaatgacagtagcttgccttattgaactggattattgtcatagat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44882522 |
gttcgcgtgctaatagaacttgtacatactagtatataatataataaataaaaactaatggcagtagcttgccttattgaactggattattgtcatagat |
44882621 |
T |
|
| Q |
218 |
aatggcgtgacagaaactagactgaaatatatgatcttacattagattcacattcatatagataatagtcagaggccttagtttttcagaaggaagatct |
317 |
Q |
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| T |
44882622 |
aatggcgtgacagaaactagactgaaatatatgatcttacattagattcacattcatatagataatagtcagaggccttagtttttcagaaggaagatct |
44882721 |
T |
|
| Q |
318 |
caatctgatatataattaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgacacaatgttctccgagtcgaattatactcgctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
44882722 |
caatctgatatataattaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgacacaatgttctccaagtcgaattatacttgctg |
44882821 |
T |
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| Q |
418 |
tgaagttctgt |
428 |
Q |
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| T |
44882822 |
tgaagttctgt |
44882832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 8994831 - 8994742
Alignment:
| Q |
231 |
aaactagactgaaatatatgatcttacattagattcacattcatatagataatagtcagaggccttagtttttcagaaggaagatctcaat |
321 |
Q |
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| T |
8994831 |
aaactagactgaa-tatatgatcatacattggattcactttcatatagataatagtcagagactttagtttttcagaaagaagatctcaat |
8994742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 8978603 - 8978527
Alignment:
| Q |
45 |
aatgatgacataaattgatgagccactaaattcaagtcttggacctattttcattaatttactcgaaccacacgttc |
121 |
Q |
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| T |
8978603 |
aatgataacataaattgatgagtcgctaaattaaagttttggacctattttcattaatttactcgaaccaaacgttc |
8978527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 386
Target Start/End: Complemental strand, 9007632 - 9007491
Alignment:
| Q |
235 |
tagactgaaatatatgatcttacattagattcacattcatatagataatagtcagaggccttagtttttcagaaggaagatctcaatctgatatataatt |
334 |
Q |
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| T |
9007632 |
tagactgaaatatatgatcatacattagattcac-ttcatctagataat--tcagagactttagtttttcaaaaagaagatctc------atat-gcatt |
9007543 |
T |
|
| Q |
335 |
aatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca |
386 |
Q |
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| T |
9007542 |
aatcactaaaaaattaacaagcagtccaaccaaccctcaatatcatgcgaca |
9007491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 9019927 - 9019877
Alignment:
| Q |
336 |
atcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca |
386 |
Q |
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||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
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| T |
9019927 |
atcactaaagagtgaacaggaagtctaataaaccctcaatatcatgcgaca |
9019877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 9029442 - 9029388
Alignment:
| Q |
332 |
attaatcactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca |
386 |
Q |
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||||||||||||| | |||||| ||| |||| ||||||||||||||||||||||| |
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| T |
9029442 |
attaatcactaaaaagtgaacaagaattccattcaaccctcaatatcatgcgaca |
9029388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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