View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_13 (Length: 386)
Name: NF11850_low_13
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 46748621 - 46748982
Alignment:
| Q |
1 |
ttgtgcaaacttttgaatgatagtaacaaaacctgataaggataagagtgtagcagcagatnnnnnnnnnngaagaattcctgaacaaattggtggcatt |
100 |
Q |
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| T |
46748621 |
ttgtgcaaacttttgaatgatagtaacaaaacctgataaggataagagtgtagcagcagataaaaaaaa---atgaattcttgaacaaattggtggcatt |
46748717 |
T |
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| Q |
101 |
taaaatgagaagttggagacaattttttataaagcctcataatatcagagtcatacatatcacaaaaatgtcacatgcactatcgcataaaagggtttgc |
200 |
Q |
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| T |
46748718 |
taaaatgagaagttggagacaattttttataaagcctcataatatcagagtcatacatatcacaaaaatgtcacatgcactatcacataaaagggtttgc |
46748817 |
T |
|
| Q |
201 |
acctgtctagtagcaagaaaaaccaaaagttaccatctcggttgcacggacacttttaattaaaggcgtatctggtgtcttatacgtgtctgataccgac |
300 |
Q |
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| T |
46748818 |
acctgtctagtagcaagaaaaaccaaaagttaccatctcggttgcacggacacttttaattaaaggtgtgtctg-----------gtgtctgataccgac |
46748906 |
T |
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| Q |
301 |
gcaacactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtca |
376 |
Q |
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| T |
46748907 |
gcaacactgacatttgtgattacattgaactatgtcgttttttcaaaattttaatggtgtcggcgtgtccgtgtca |
46748982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 42874581 - 42874509
Alignment:
| Q |
302 |
caacactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgt |
374 |
Q |
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| T |
42874581 |
caacactgacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgt |
42874509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 18170492 - 18170555
Alignment:
| Q |
312 |
atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtc |
375 |
Q |
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|||||| ||||||||||| |||| |||||||||| ||||||| ||||||||||||| ||||| |
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| T |
18170492 |
atttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtc |
18170555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 18634060 - 18634123
Alignment:
| Q |
312 |
atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtc |
375 |
Q |
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| T |
18634060 |
atttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtc |
18634123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 42192351 - 42192284
Alignment:
| Q |
286 |
gtgtctgataccgacgcaacactgatatttgtgattacattgaactatgccgttttttcaaaatttta |
353 |
Q |
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| T |
42192351 |
gtgtctgatgccgacgcaacattgacatgtgtgattacattgaattatgtcattgtctcaaaatttta |
42192284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 1334710 - 1334669
Alignment:
| Q |
312 |
atttgtgattacattgaactatgccgttttttcaaaatttta |
353 |
Q |
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| T |
1334710 |
atttgtgattacattgaattatgtccttttttcaaaatttta |
1334669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 14338493 - 14338534
Alignment:
| Q |
312 |
atttgtgattacattgaactatgccgttttttcaaaatttta |
353 |
Q |
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|||||||||||||||||| |||| | |||||||||||||||| |
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| T |
14338493 |
atttgtgattacattgaattatgtcattttttcaaaatttta |
14338534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 41319327 - 41319383
Alignment:
| Q |
319 |
attacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtc |
375 |
Q |
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||||||||||| |||| | |||||||||| | ||| |||||||| |||||||||||| |
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| T |
41319327 |
attacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc |
41319383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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