View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_16 (Length: 342)
Name: NF11850_low_16
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 45552408 - 45552086
Alignment:
| Q |
8 |
aagaaccaaactagacacttgtattaccatatagtaatcca--gtcacagaatattaatatcataaaattatttgtgtatatcattatcattagctgtca |
105 |
Q |
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| T |
45552408 |
aagaaccaaactagacacttgtattaccatatactaatccacagtcacagaatattaatatcataaaattatttgtgtatatcattatcattagctgtca |
45552309 |
T |
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| Q |
106 |
aataattaaagtaaccattaaaaaatgataagagtaccattgttatgtttttctctccttccaaacagccatagacacttgtgcagtttcatctatacgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552308 |
aataattaaagtaaccattaaaaaatgataagagcaccattgttatgtttttctctccttccaaacagccatagacacttgtgcagtttcatctatacgt |
45552209 |
T |
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| Q |
206 |
actcacgtgtacaagagcagttttgtcttatgacaaagactaccaattataggactccacgtacacaaatatactcaacacgtgtcaaatattaattaca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552208 |
actcacgtgtacaagagcagttttgtcttatgacaaagactaccaattataggactccacgtacacaaatatactcaacacgtgtcaaatattaattaca |
45552109 |
T |
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| Q |
306 |
tgttggttatgtgacatgtgtct |
328 |
Q |
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||||||||||||||||||||||| |
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| T |
45552108 |
tgttggttatgtgacatgtgtct |
45552086 |
T |
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