View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_19 (Length: 260)
Name: NF11850_low_19
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15735198 - 15735439
Alignment:
| Q |
1 |
tccaatgattgttgacttaaacactgaaaatacaatttatcttcaagtttctgtctctgagaaaccaagtggaccaaaccctgcctcacgcaacaagtgt |
100 |
Q |
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| T |
15735198 |
tccaatgattgttgacttaaacactgaaaatacaatttatcttcaagtttctgtctctgagaaaccaagtggaccaaaccctgcctcacgcaacaagtgt |
15735297 |
T |
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| Q |
101 |
tctgatggaagcacctccttcacacctactgctgcatgttttagtaagtatggaaacctggtttatgtaggaaactcgaaaggtgaaattcttgtaattg |
200 |
Q |
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| T |
15735298 |
tctgatggaagcacctccttcacacctactgctgcatgttttagtaagtatggaaacctggtttatgtaggaaactcgaaaggtgaaattcttgtaattg |
15735397 |
T |
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| Q |
201 |
acagtaaagatggcgaggtgcgtgccatggttcctatctctg |
242 |
Q |
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| T |
15735398 |
acaataaagatggcgaggtgcgtgccatggttcctatctctg |
15735439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17739093 - 17739334
Alignment:
| Q |
1 |
tccaatgattgttgacttaaacactgaaaatacaatttatcttcaagtttctgtctctgagaaaccaagtggaccaaaccctgcctcacgcaacaagtgt |
100 |
Q |
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| T |
17739093 |
tccaatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaagtggaccaaaccctgcctcacgcaacaagggt |
17739192 |
T |
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| Q |
101 |
tctgatggaagcacctccttcacacctactgctgcatgttttagtaagtatggaaacctggtttatgtaggaaactcgaaaggtgaaattcttgtaattg |
200 |
Q |
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| T |
17739193 |
tctgatggaagtacctccttcacacctactgcagcatgttttagtaagtatggaaaccttgtttatgtgggaaactcgaaaggtgaaattcttgtaattg |
17739292 |
T |
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| Q |
201 |
acagtaaagatggcgaggtgcgtgccatggttcctatctctg |
242 |
Q |
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| T |
17739293 |
acagtaaagatggcgaggtacatgccatggttcctatctctg |
17739334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 17753245 - 17753482
Alignment:
| Q |
5 |
atgattgttgacttaaacactgaaaatacaatttatcttcaagtttctgtctctgagaaaccaagtggaccaaaccctgcctcacgcaacaagtgttctg |
104 |
Q |
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| T |
17753245 |
atgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaagtggaccaaaccctgcctcacgcaacaagggttccg |
17753344 |
T |
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| Q |
105 |
atggaagcacctccttcacacctactgctgcatgttttagtaagtatggaaacctggtttatgtaggaaactcgaaaggtgaaattcttgtaattgacag |
204 |
Q |
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| T |
17753345 |
atggaagtacctccttcacacctactgctgcatgttttagtaagtatggaaaccttgtttatatgggaaactcgaaaggtgaaattcttgtaattgacag |
17753444 |
T |
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| Q |
205 |
taaagatggcgaggtgcgtgccatggttcctatctctg |
242 |
Q |
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| T |
17753445 |
taaagatggcgagatgcgtgccatggttcctatctctg |
17753482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 17762232 - 17762469
Alignment:
| Q |
5 |
atgattgttgacttaaacactgaaaatacaatttatcttcaagtttctgtctctgagaaaccaagtggaccaaaccctgcctcacgcaacaagtgttctg |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
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| T |
17762232 |
atgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaagtggaccaaaccctgcctcacgcaacaagggttccg |
17762331 |
T |
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| Q |
105 |
atggaagcacctccttcacacctactgctgcatgttttagtaagtatggaaacctggtttatgtaggaaactcgaaaggtgaaattcttgtaattgacag |
204 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
17762332 |
atggaagtacctccttcacacctactgctgcatgttttagtaagtatggaaaccttgtttatatgggaaactcgaaaggtgaaattcttgtaattgacag |
17762431 |
T |
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| Q |
205 |
taaagatggcgaggtgcgtgccatggttcctatctctg |
242 |
Q |
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| T |
17762432 |
taaagatggcgagatgcgtgccatggttcctatctctg |
17762469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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