View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_2 (Length: 590)
Name: NF11850_low_2
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 15735164 - 15734781
Alignment:
| Q |
1 |
ggttttgaggaccccggatgaagacgggctagtaaaggggtttgctgcaaaactcttctttttatccttttaccactcatgacatcccacagggataatg |
100 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15735164 |
ggttttgtggaccctggatgaagacgagctagtaaaggggtttgctgcaaaactcttctttttatccttttaccactcatgacatcccacagggataatg |
15735065 |
T |
|
| Q |
101 |
acttgtcagcagcagatacaataattcgattaccacactttgaccaacaaatactggtaatgggagaagaacattcattatctcgaagctctttagcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
15735064 |
acttgtcagcagcagatacaataattcgattaccacactttgaccaacaaatactggtgatgggagaagagcattcattatctcgaagctctttagcaat |
15734965 |
T |
|
| Q |
201 |
gcccctggtttcaaaatcccagataacacagcttccatcattgcagccagctgattcaatttatcagatcaagtaacatgagtgagaaagttggtaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15734964 |
gcccctggtttcaaaatcccagataacacagcttccatcattgcagccagctgattcaatttatcaaatcaagtaacatgagtgagaaagttggtaatgt |
15734865 |
T |
|
| Q |
301 |
agaatatttgagtaaataattcataaaagagcaacacatgctgctatattttaaatccaatccacgcattcaaatgcaaattta |
384 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15734864 |
agaatatttgaataaataattcataaaagagcaacacatgctgctatattttaaatccaatccacgcattcaaatgcaaattta |
15734781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 571
Target Start/End: Complemental strand, 17739053 - 17738493
Alignment:
| Q |
7 |
gaggaccccggatgaagacgggctagtaaaggggtttgctgcaaaactcttctttttatccttttaccactcatgacatcccacagggataatgacttgt |
106 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
17739053 |
gaggatcccggattaagacgggctagtaaaggggtttgctgcaaaactattctttttatccttttaccactcaagacgtcccacagggataatgacttgt |
17738954 |
T |
|
| Q |
107 |
cagcagcagatacaataattcgattaccacactttgaccaacaaatactggtaatgggagaagaacattcattatctcgaagctctttagcaatgcccct |
206 |
Q |
| |
|
| ||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||| |
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|
| T |
17738953 |
ctgcagcagatgcaagaattcgattaccaccctttgaccaacaaatactggtgatgggagaacagcattcattatctcgaagctctttagcaacgcccct |
17738854 |
T |
|
| Q |
207 |
ggtttcaaaatcccagataacacagcttccatcattgcagccagctgattcaatttatcagatcaagtaacatgagtgagaaagttggtaatgtagaata |
306 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17738853 |
gacttcaaaatcccaaataacacagcttccatcattgcagccagctgattaaatttatcaaatcaagtaacatgagtgagaatgttggtaatgtagaata |
17738754 |
T |
|
| Q |
307 |
-tttgagtaaataattcataaaagagcaacacatgctgctatattttaaatccaatccacgcattcaaatgcaaatttaagcatatatgcttcaaagtnn |
405 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
17738753 |
ccttgagtgaataattcataaaagagcaacaca---tgctatatttt-aatccaatccacacattcaaatgcaaatttaagcatatatgcttcaaagtag |
17738658 |
T |
|
| Q |
406 |
nnnnnnnnnnnnnnnntgtgttggccagaaagatatacagttgctaatactacctcctgaaatctaatcccacaatgaaaagaaataaagtatactcgga |
505 |
Q |
| |
|
| |||| ||||||||||||||| | |||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | |
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|
| T |
17738657 |
ggaaggaaaaaaaaaacgcgttgaccagaaagatatacactcactaatactacctcctgaaatctaatcccactaggaaaataaataaagtatactc-aa |
17738559 |
T |
|
| Q |
506 |
aagtttttacggtaaatacttgaaagcactgaatttttcttttctaaataaattacatgcaacaca |
571 |
Q |
| |
|
|| ||||||||||| ||||||||| ||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
17738558 |
aactttttacggtatatacttgaacgcactgaatttttcttttccagatagattacatgcaacaca |
17738493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 17753207 - 17752808
Alignment:
| Q |
1 |
ggttttgaggaccccggatgaagacgggctagtaaaggggtttgctgcaaaactcttctttttatccttttaccactcatgacatcccacagggataatg |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
17753207 |
ggtttggaggaccccggatgaagacgagctagtaaaggggtttgctgcaaaactattctttttatccgtttaccactcaagacatcccacagggataatg |
17753108 |
T |
|
| Q |
101 |
acttgtcagcagcagatacaataattcgattaccacactttgaccaacaaatactggtaatgggagaagaacattcattatctcgaagctctttagcaat |
200 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
17753107 |
acttgtctgcagcagatgcaagaattcgattaccaccctttgaccaacaaatactggtaatgggagaacaacattcatcatctcgaagctctttagcaac |
17753008 |
T |
|
| Q |
201 |
gcccctggtttcaaaatcccagataacacagcttccatcattgcagccagctgattcaatttatcagatcaagtaacatgagtgagaaagttggtaatgt |
300 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
17753007 |
gcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattcagtttatcaaatcaagtaagatgagtgagaaagttggtaatgt |
17752908 |
T |
|
| Q |
301 |
agaata-tttgagtaaataattcataaaagagcaacacatgctgctatattttaaatccaatccacgcattcaaatgcaaatttaagcatatatgcttca |
399 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||| |
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|
| T |
17752907 |
agaataccttgagtgaataattcataaaagagcaacaca---tgctatatttt-aatccaatccacacattcaaatgcaaatttaagcgtgtatgcttca |
17752812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 17762194 - 17761795
Alignment:
| Q |
1 |
ggttttgaggaccccggatgaagacgggctagtaaaggggtttgctgcaaaactcttctttttatccttttaccactcatgacatcccacagggataatg |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
17762194 |
ggtttggaggaccccggatgaagacgagctagtaaaggggtttgctgcaaaactattctttttatccgtttaccactcaagacatcccacagggataatg |
17762095 |
T |
|
| Q |
101 |
acttgtcagcagcagatacaataattcgattaccacactttgaccaacaaatactggtaatgggagaagaacattcattatctcgaagctctttagcaat |
200 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
17762094 |
acttgtctgcagcagatgcaagaattcgattaccaccctttgaccaacaaatactggtaatgggagaacaacattcatcatctcgaagctctttagcaac |
17761995 |
T |
|
| Q |
201 |
gcccctggtttcaaaatcccagataacacagcttccatcattgcagccagctgattcaatttatcagatcaagtaacatgagtgagaaagttggtaatgt |
300 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
17761994 |
gcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattcagtttatcaaatcaagtaagatgagtgagaaagttggtaatgt |
17761895 |
T |
|
| Q |
301 |
agaata-tttgagtaaataattcataaaagagcaacacatgctgctatattttaaatccaatccacgcattcaaatgcaaatttaagcatatatgcttca |
399 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
17761894 |
agaataccttgagtgaataattcataaaagagcaacaca---tgctatatttt-aatccaatccacacattcaaatgcaaatttaagcgtgtatgcttca |
17761799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 430 - 571
Target Start/End: Complemental strand, 17752776 - 17752636
Alignment:
| Q |
430 |
ccagaaagatatacagttgctaatactacctcctgaaatctaatcccacaatgaaaagaaataaagtatactcggaaagtttttacggtaaatacttgaa |
529 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
17752776 |
ccagaaagatatacactcactaatactacctcctgaaatctaatcccacaaggaaaataaa-aaagtatactcaaaaaggttttaaggtaaatacttgaa |
17752678 |
T |
|
| Q |
530 |
agcactgaatttttcttttctaaataaattacatgcaacaca |
571 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17752677 |
agcactgaatttttcttttccaaatagattacatgcaacaca |
17752636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 430 - 571
Target Start/End: Complemental strand, 17761763 - 17761623
Alignment:
| Q |
430 |
ccagaaagatatacagttgctaatactacctcctgaaatctaatcccacaatgaaaagaaataaagtatactcggaaagtttttacggtaaatacttgaa |
529 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
17761763 |
ccagaaagatatacactcactaatactacctcctgaaatctaatcccacaaggaaaataaa-aaagtatactcaaaaaggttttaaggtaaatacttgaa |
17761665 |
T |
|
| Q |
530 |
agcactgaatttttcttttctaaataaattacatgcaacaca |
571 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17761664 |
agcactgaatttttcttttccaaatagattacatgcaacaca |
17761623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 29516448 - 29516656
Alignment:
| Q |
46 |
tgcaaaactcttctttttatccttttaccactcatgacatcccacagggataatgacttgtcagcagcagatacaataattcgattaccacactttgacc |
145 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||| ||||||||||| ||| |||||||||||||||||||||| ||| |||||| | || ||||||| |
|
|
| T |
29516448 |
tgcaaaacttttctttttataactttaccattcataacatcccacagtaatagcgacttgtcagcagcagatacaagaatccgattaacgcattttgacc |
29516547 |
T |
|
| Q |
146 |
aacaaatactggtaatgggagaagaacattcattatctcgaagctctttagcaatgcccctggtttcaaaatcccagataacacagcttccatcattgca |
245 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
29516548 |
aacaaatacttgtcatgggagaagaacattcattatctcgaagctctttagcaatgcccctggtttcaaaatcccagataacgcaacttccatcattgga |
29516647 |
T |
|
| Q |
246 |
gccagctga |
254 |
Q |
| |
|
|||||||| |
|
|
| T |
29516648 |
cccagctga |
29516656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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