View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11850_low_22 (Length: 253)

Name: NF11850_low_22
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11850_low_22
NF11850_low_22
[»] chr1 (4 HSPs)
chr1 (41-98)||(5110876-5110933)
chr1 (169-208)||(5110977-5111016)
chr1 (109-156)||(5110946-5110993)
chr1 (177-231)||(21034557-21034611)
[»] chr5 (2 HSPs)
chr5 (169-232)||(19868706-19868769)
chr5 (169-232)||(2864132-2864195)
[»] chr6 (1 HSPs)
chr6 (169-235)||(17417696-17417762)
[»] chr4 (1 HSPs)
chr4 (168-233)||(39194089-39194154)
[»] chr8 (2 HSPs)
chr8 (177-232)||(20167605-20167660)
chr8 (171-212)||(12893726-12893767)
[»] chr7 (1 HSPs)
chr7 (177-232)||(44389314-44389369)


Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 5110933 - 5110876
Alignment:
Q  41 aaggagtattatcattctctttattctcttatttttgaccatgctcgtaaattgtaaa 98  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5110933 aaggagtataatcattctctttattctcttattttttaccatgctcgtaaattgtaaa 5110876  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 5110977 - 5111016
Alignment:
Q  169 agatgacatatttgacattatgcaatattgacttaacata 208  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5110977 agatgacatatttgacattatgcaatattgacttaacata 5111016  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 5110946 - 5110993
Alignment:
Q  109 gagaatgataacactctatccgttccatattagatgacatatttgaca 156  Q
    ||||||||||| ||||| ||  ||||||||||||||||||||||||||    
T  5110946 gagaatgataatactctctcacttccatattagatgacatatttgaca 5110993  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 21034557 - 21034611
Alignment:
Q  177 tatttgacattatgcaatattgacttaacatactttaataatatgtttctactaa 231  Q
    ||||||||| ||| || ||||||||||||||||||| || |||| ||||||||||    
T  21034557 tatttgacaatatacattattgacttaacatactttgattatatttttctactaa 21034611  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 19868706 - 19868769
Alignment:
Q  169 agatgacatatttgacattatgcaatattgacttaacatactttaataatatgtttctactaat 232  Q
    ||||||||||||||| ||||| || ||||||||||||||||||| |  |||| |||||||||||    
T  19868706 agatgacatatttgaaattatacattattgacttaacatactttgaagatatttttctactaat 19868769  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 2864195 - 2864132
Alignment:
Q  169 agatgacatatttgacattatgcaatattgacttaacatactttaataatatgtttctactaat 232  Q
    ||||||||||||||| | ||| || ||||||||||||||||||| |  |||| |||||||||||    
T  2864195 agatgacatatttgataatatacattattgacttaacatactttcaccatatttttctactaat 2864132  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 17417762 - 17417696
Alignment:
Q  169 agatgacatatttgacattatgcaatattgacttaacatactttaataatatgtttctactaatata 235  Q
    ||||||||| ||||||| |||||||| |||||  |||||| |||||| |||| ||||||||||||||    
T  17417762 agatgacatgtttgacaatatgcaattttgaccaaacataatttaatcatatttttctactaatata 17417696  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 39194154 - 39194089
Alignment:
Q  168 aagatgacatatttgacattatgcaatattgacttaacatactttaataatatgtttctactaata 233  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||| |   ||| ||||||||||||    
T  39194154 aagatgacctatttgacaatatacaatattgacttaacatactttgactgtatttttctactaata 39194089  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 20167605 - 20167660
Alignment:
Q  177 tatttgacattatgcaatattgacttaacatactttaataatatgtttctactaat 232  Q
    ||||||||| ||| || ||||||||||||||| ||| ||||||| |||||||||||    
T  20167605 tatttgacaatatacactattgacttaacatattttgataatatttttctactaat 20167660  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 12893767 - 12893726
Alignment:
Q  171 atgacatatttgacattatgcaatattgacttaacatacttt 212  Q
    ||||| ||||||||| |||||| |||||||||||||||||||    
T  12893767 atgacctatttgacaatatgcattattgacttaacatacttt 12893726  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 44389314 - 44389369
Alignment:
Q  177 tatttgacattatgcaatattgacttaacatactttaataatatgtttctactaat 232  Q
    ||||||||| ||| || ||||||||||||||| ||| ||||||| |||||||||||    
T  44389314 tatttgacaatatacactattgacttaacatattttgataatatttttctactaat 44389369  T

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