View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_24 (Length: 244)
Name: NF11850_low_24
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_24 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 47477596 - 47477818
Alignment:
| Q |
22 |
gagattactatttactcgtctgtccggatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaacc |
121 |
Q |
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| T |
47477596 |
gagattactatttactcgtctgtccagatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaacc |
47477695 |
T |
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| Q |
122 |
aaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaaatgccaatttctt |
221 |
Q |
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| T |
47477696 |
aaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaaatgccaatttctt |
47477795 |
T |
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| Q |
222 |
caggaagaggatcattgtatcct |
244 |
Q |
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| T |
47477796 |
caggaagaggatcattgtatcct |
47477818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 47486857 - 47486988
Alignment:
| Q |
109 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaa |
208 |
Q |
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| T |
47486857 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
47486956 |
T |
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| Q |
209 |
atgccaatttcttcaggaagaggatcattgta |
240 |
Q |
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| T |
47486957 |
ataccatcttgctcaggaagaagatcactgta |
47486988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 47474260 - 47474322
Alignment:
| Q |
178 |
gcctttactgaatgcatgattaattacggaaatgccaatttcttcaggaagaggatcattgta |
240 |
Q |
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| T |
47474260 |
gcctttactgaaagcatagttaattacggaaataccatcttgttcaggaagaggatcattgta |
47474322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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