View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_26 (Length: 239)
Name: NF11850_low_26
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 39834815 - 39834624
Alignment:
| Q |
32 |
gcatcatgcaaaatccattagtttagttagtataagtgttaaagtttcccactacatcatcttttttagaccaa-gcatagaagagggaataatgttata |
130 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
39834815 |
gcatcatgcaaaatacattagtttagttagtataagtgttaaagtttcacactatatcatcttttttaaacgaaagcatagaagagggaataatgttata |
39834716 |
T |
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| Q |
131 |
tcgcaaacaattcaataaacagcaagcaacatagtatatccgagcctgcaatgccactcctcccctcccactcaaggaatcaaagctgactt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39834715 |
tcgcaaacaattcaataaacagcaagcaacatagtatatccgagcctgcaatgccactcctcccctcccactcaaggaatcaaagctgactt |
39834624 |
T |
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