View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11850_low_28 (Length: 237)

Name: NF11850_low_28
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11850_low_28
NF11850_low_28
[»] chr3 (3 HSPs)
chr3 (94-223)||(12113650-12113779)
chr3 (101-213)||(6607254-6607366)
chr3 (1-32)||(21224286-21224317)
[»] chr4 (4 HSPs)
chr4 (102-218)||(41816212-41816329)
chr4 (3-32)||(35321346-35321375)
chr4 (1-33)||(24234543-24234575)
chr4 (1-33)||(47606913-47606945)
[»] chr2 (5 HSPs)
chr2 (123-223)||(15444670-15444770)
chr2 (1-33)||(3330925-3330957)
chr2 (1-33)||(33891907-33891939)
chr2 (1-31)||(32493808-32493838)
chr2 (1-33)||(41670351-41670383)
[»] scaffold0060 (1 HSPs)
scaffold0060 (101-218)||(48485-48603)
[»] chr5 (5 HSPs)
chr5 (110-151)||(9912733-9912774)
chr5 (101-194)||(15415470-15415563)
chr5 (101-141)||(23977924-23977964)
chr5 (1-32)||(5841594-5841625)
chr5 (1-32)||(26244269-26244300)
[»] chr7 (6 HSPs)
chr7 (1-33)||(45234369-45234401)
chr7 (1-32)||(28337085-28337116)
chr7 (1-32)||(37597548-37597579)
chr7 (1-32)||(48268942-48268973)
chr7 (1-31)||(9157547-9157577)
chr7 (1-33)||(5278001-5278033)
[»] chr1 (5 HSPs)
chr1 (1-33)||(51162070-51162102)
chr1 (1-32)||(12880560-12880591)
chr1 (1-32)||(23028088-23028119)
chr1 (1-32)||(36699875-36699906)
chr1 (1-32)||(36715979-36716010)
[»] chr8 (1 HSPs)
chr8 (1-33)||(45237991-45238023)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 12113650 - 12113779
Alignment:
Q  94 caggcccaaatcattctagtttgtgaattaagtgaatggtggataaacactagcgcataacgccaaatttattatgattatgtgatgttcaaaacatatg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  12113650 caggcccaaatcattctagtttgtgaattaagtgaatggtggataaacactagtgcataacgccaagtttgttatgattatgtgatgttcaaaacatatg 12113749  T
Q  194 ctactgctgagaataagaaaatgttcttat 223  Q
    ||||||||||||||||||||||||| ||||    
T  12113750 ctactgctgagaataagaaaatgttgttat 12113779  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 6607254 - 6607366
Alignment:
Q  101 aaatcattctagtttgtgaattaagtgaatggtggataaacactagcgcataacgccaaatttattatgattatgtgatgttcaaaacatatgctactgc 200  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||  || |   || ||||  ||||||||||  |||||| ||||||||||||||||    
T  6607254 aaatcattctagttggtgaattaagtgaatggtgaataaacattagcttatcagagcatatttgctatgattatgctatgttcgaaacatatgctactgc 6607353  T
Q  201 tgagaataagaaa 213  Q
    ||| |||||||||    
T  6607354 tgaaaataagaaa 6607366  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 21224286 - 21224317
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  21224286 tgaaataacttttactatttttgagtaaattt 21224317  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 41816329 - 41816212
Alignment:
Q  102 aatcattctagtttgtgaattaagtgaatggtggataaacactagcgcataacgccaaatttattatgattatgtgatgttc-aaaacatatgctactgc 200  Q
    ||||||||||||| |||||||||||| ||| |||||||||| |||||||| ||| ||  |||  ||||||||||| |||||| |||||||||| || |||    
T  41816329 aatcattctagttggtgaattaagtggatgatggataaacattagcgcatcacgtcatgttttctatgattatgttatgttcaaaaacatatgttattgc 41816230  T
Q  201 tgagaataagaaaatgtt 218  Q
    ||||||||||||| ||||    
T  41816229 tgagaataagaaagtgtt 41816212  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 35321375 - 35321346
Alignment:
Q  3 aaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||    
T  35321375 aaataacttttactatttttgagtaaattt 35321346  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24234575 - 24234543
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    ||||||||||| |||||||||||||||||||||    
T  24234575 tgaaataacttctactatttttgagtaaatttt 24234543  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47606913 - 47606945
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    |||||||||||||||||||||| ||||||||||    
T  47606913 tgaaataacttttactattttttagtaaatttt 47606945  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 15444670 - 15444770
Alignment:
Q  123 aagtgaatggtggataaacactagcgcataacgccaaatttattatgattatgtgatgttcaaaacatatgctactgctgagaataagaaaatgttctta 222  Q
    |||||||||||||||||||| |||| | |  || ||  |||  |||||||||||||||||||||||||||||||||  ||| ||||||||| |||| |||    
T  15444670 aagtgaatggtggataaacattagcacctcgcgtcatgtttgatatgattatgtgatgttcaaaacatatgctacttttgaaaataagaaagtgttgtta 15444769  T
Q  223 t 223  Q
    |    
T  15444770 t 15444770  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3330925 - 3330957
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  3330925 tgaaataacttttactatttttgagtaaatttt 3330957  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33891907 - 33891939
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  33891907 tgaaataacttttactatttttgagtaaatttt 33891939  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 32493808 - 32493838
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatt 31  Q
    |||||||||||||||||||||||||||||||    
T  32493808 tgaaataacttttactatttttgagtaaatt 32493838  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41670351 - 41670383
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    ||||||||||| |||||||||||||||||||||    
T  41670351 tgaaataacttctactatttttgagtaaatttt 41670383  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 48485 - 48603
Alignment:
Q  101 aaatcattctagtttgtgaattaagtgaatggtggataaacactagcgcataacgcca-aatttattatgattatgtgatgttcaaaacatatgctactg 199  Q
    |||||| |||||||| ||||||||||||||| |||||||||| ||| || |  ||| |   |||  ||||||||||  |||||||||||||||| |||||    
T  48485 aaatcaatctagtttatgaattaagtgaatgatggataaacattagtgcctcgcgctatgttttgctatgattatgctatgttcaaaacatatgatactg 48584  T
Q  200 ctgagaataagaaaatgtt 218  Q
    | || ||||||||| ||||    
T  48585 ccgaaaataagaaagtgtt 48603  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 9912774 - 9912733
Alignment:
Q  110 tagtttgtgaattaagtgaatggtggataaacactagcgcat 151  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  9912774 tagtttgtgaaataagtgaatggtggataaacattagcgcat 9912733  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 15415470 - 15415563
Alignment:
Q  101 aaatcattctagtttgtgaattaagtgaatggtggataaacactagcgcataacgccaaatttattatgattatgtgatgttcaaaacatatgc 194  Q
    |||||| | ||||| ||||||||||||||||||||||||||| |||||  | ||| ||  ||| |||||||||    |||||||||||||||||    
T  15415470 aaatcaatttagttggtgaattaagtgaatggtggataaacattagcgactcacgtcatgtttgttatgattaatctatgttcaaaacatatgc 15415563  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 23977924 - 23977964
Alignment:
Q  101 aaatcattctagtttgtgaattaagtgaatggtggataaac 141  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  23977924 aaatcattctagttggtgaattaagtgaatgatggataaac 23977964  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 5841594 - 5841625
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  5841594 tgaaataacttttactatttttgagtaaattt 5841625  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26244300 - 26244269
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  26244300 tgaaataacttttactatttttgagtaaattt 26244269  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45234401 - 45234369
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  45234401 tgaaataacttttactatttttgagtaaatttt 45234369  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 28337085 - 28337116
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  28337085 tgaaataacttttactatttttgagtaaattt 28337116  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37597548 - 37597579
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  37597548 tgaaataacttttactatttttgagtaaattt 37597579  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48268942 - 48268973
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  48268942 tgaaataacttttactatttttgagtaaattt 48268973  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9157577 - 9157547
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatt 31  Q
    |||||||||||||||||||||||||||||||    
T  9157577 tgaaataacttttactatttttgagtaaatt 9157547  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5278001 - 5278033
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    ||||||||||| |||||||||||||||||||||    
T  5278001 tgaaataacttctactatttttgagtaaatttt 5278033  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51162070 - 51162102
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  51162070 tgaaataacttttactatttttgagtaaatttt 51162102  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12880560 - 12880591
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  12880560 tgaaataacttttactatttttgagtaaattt 12880591  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23028088 - 23028119
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  23028088 tgaaataacttttactatttttgagtaaattt 23028119  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36699906 - 36699875
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  36699906 tgaaataacttttactatttttgagtaaattt 36699875  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36716010 - 36715979
Alignment:
Q  1 tgaaataacttttactatttttgagtaaattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  36716010 tgaaataacttttactatttttgagtaaattt 36715979  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45237991 - 45238023
Alignment:
Q  1 tgaaataacttttactatttttgagtaaatttt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  45237991 tgaaataacttttactatttttgagtaattttt 45238023  T

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