View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_29 (Length: 231)
Name: NF11850_low_29
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 46748457 - 46748521
Alignment:
| Q |
45 |
tgttgaagtatggtttatcttatgtgtgtaataattaatgatggaacaaatgatcataacaataa |
109 |
Q |
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| T |
46748457 |
tgttgaagtatggtttatcttatgtgtgtaataattaatgatggaacaaatgatcataacaataa |
46748521 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 231
Target Start/End: Original strand, 46748552 - 46748583
Alignment:
| Q |
200 |
acaaattggatatatgccaaacaatctctaat |
231 |
Q |
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| T |
46748552 |
acaaattggatatatgccaaacaatctctaat |
46748583 |
T |
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