View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11850_low_3 (Length: 584)

Name: NF11850_low_3
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11850_low_3
NF11850_low_3
[»] chr8 (4 HSPs)
chr8 (145-569)||(41375621-41376045)
chr8 (40-130)||(41375498-41375588)
chr8 (57-116)||(10621383-10621442)
chr8 (60-130)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (57-130)||(44662457-44662530)
chr7 (60-130)||(46195949-46196019)
chr7 (57-129)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (57-130)||(24202178-24202251)
chr2 (89-129)||(38790090-38790130)
chr2 (66-103)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (66-118)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (57-128)||(9489505-9489576)
chr3 (66-116)||(27394544-27394594)
chr3 (66-118)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (57-113)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 145 - 569
Target Start/End: Original strand, 41375621 - 41376045
Alignment:
Q  145 ttaacatgagccgtcgaatttaattaacagtttagatttagnnnnnnnnnnnnnnnaatttaaacccctaacacaagaaatcagatactagtctttccct 244  Q
    |||||||||||||||| ||||||||||||||||||||||||               |||||||||||||||||||||||||||||  |||||||| ||||    
T  41375621 ttaacatgagccgtcggatttaattaacagtttagatttagtttttttcattttttaatttaaacccctaacacaagaaatcagaacctagtcttcccct 41375720  T
Q  245 tcctttcactcatcttcatcgagttctcgtcctcgtctgtcaaatagatattgcagttttcatccattttcgtcctggttgggaatctgttcatgccaaa 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41375721 tcctttcactcatcttcatcgagttctcgtcctcgtctgtcaaatagatattgcagttttaatccattttcgtcctggttgggaatctgttcatgccaaa 41375820  T
Q  345 gaagaagaacatatcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttaca 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41375821 gaagaagaacatatcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttaca 41375920  T
Q  445 acttattgttgatatttcaaagttctaacgagnnnnnnnntaataagaagggagcggtaataacagccacaagaggagcttaatgcatgaaggagatatt 544  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41375921 acttattgttgatatttcaaagttctaacgagaaaaaaaataataagaagggaggggtaataacagccacaagaggagcttaatgcatgaaggagatatt 41376020  T
Q  545 gattgaattgaaatcaatggaaaag 569  Q
    |||||||||||||||||||||||||    
T  41376021 gattgaattgaaatcaatggaaaag 41376045  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 41375498 - 41375588
Alignment:
Q  40 tgtgagcttagttcatttgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 130  Q
    ||||||||||| ||| ||| |||||||||| ||||| | |||||||||   |||||||| |||||||||||||||||| | ||||||||||    
T  41375498 tgtgagcttagctcacttgtattatgtatgtaggggttggggtttgaactccggacacctcactatttcacctttaaagtgaatttctcca 41375588  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 10621442 - 10621383
Alignment:
Q  57 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaa 116  Q
    |||||||||||||||||||   ||||||||| | ||||||||||| | ||||||||||||    
T  10621442 tgcattatgtatgcaggggtcagggtttgaaccccggacaccccattttttcacctttaa 10621383  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 30659984 - 30660054
Alignment:
Q  60 attatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 130  Q
    ||||||||||||||||   |||||  || | ||||||||||||||||||||||||||  ||||||| ||||    
T  30659984 attatgtatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaaggtaaatttttcca 30660054  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 44662530 - 44662457
Alignment:
Q  57 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 130  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||  | ||||||||||    
T  44662530 tgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttctcca 44662457  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 46195949 - 46196019
Alignment:
Q  60 attatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 130  Q
    ||||||||||||||||   ||||||||| | ||||||||||||||||||||||||||  | ||||||||||    
T  46195949 attatgtatgcaggggtcggggtttgaaccccggacaccccactatttcacctttaaggtgaatttctcca 46196019  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 6548778 - 6548707
Alignment:
Q  57 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcc 129  Q
    |||||||||||||||||| |  ||||| |||   ||||||||||||||||||||||||||  | |||||||||    
T  6548778 tgcattatgtatgcagggccg-gggttcgaactccggacaccccactatttcacctttaaggtgaatttctcc 6548707  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 24202178 - 24202251
Alignment:
Q  57 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 130  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||  | ||||||||||    
T  24202178 tgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttctcca 24202251  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 38790130 - 38790090
Alignment:
Q  89 ctcggacaccccactatttcacctttaaaataaatttctcc 129  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  38790130 ctcggacaccccactatttcacctttaagatgaatttctcc 38790090  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 40473580 - 40473543
Alignment:
Q  66 tatgcaggggcttgggtttgaatctcggacaccccact 103  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  40473580 tatgcaggggctggggtttgaacctcggacaccccact 40473543  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 7234002 - 7234054
Alignment:
Q  66 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaa 118  Q
    |||||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  7234002 tatgcaggggctggggtttgaacctcggacaccccacttattcaccttgaaaa 7234054  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 9489505 - 9489576
Alignment:
Q  57 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctc 128  Q
    ||||||||||||||||||||  ||||| ||| |  ||| |||| |||||||||||||||| || ||||||||    
T  9489505 tgcattatgtatgcaggggccggggttcgaaccctggataccctactatttcacctttaagatgaatttctc 9489576  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 27394544 - 27394594
Alignment:
Q  66 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaa 116  Q
    |||||||||||| ||||||||| | |||||||||||||  |||||||||||    
T  27394544 tatgcaggggctggggtttgaaccccggacaccccacttattcacctttaa 27394594  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 40160772 - 40160824
Alignment:
Q  66 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaa 118  Q
    ||||| |||||| ||||||||| | |||||||||||||  |||||||||||||    
T  40160772 tatgccggggctggggtttgaaccccggacaccccacttattcacctttaaaa 40160824  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 32660858 - 32660914
Alignment:
Q  57 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctt 113  Q
    |||||||| |||||||||||| |||||  || | ||||||||||||| |||||||||    
T  32660858 tgcattatatatgcaggggctggggttcaaaccccggacaccccactttttcacctt 32660914  T

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