View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_4 (Length: 555)
Name: NF11850_low_4
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 74 - 545
Target Start/End: Original strand, 27507109 - 27507580
Alignment:
| Q |
74 |
gagctatctgcttgcctaaggaaaaacttagacttgtatgtcctcaaatttgacagtaaaaataatatgaacagtcagtgcagagctaaacttatttttc |
173 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27507109 |
gagctatctgcttgcctaaggaaaaatgtagacttgtatgtcctcaaatttgacagtaaaaataatatgaacagtcagtgcagagctaaacttatttttc |
27507208 |
T |
|
| Q |
174 |
agaaccaaacataagttgtatccacagaacaaaattagttttgctatttcaattagctaatggggaaaggacctaccatcaaatgtacatgaaagaataa |
273 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27507209 |
agaaccaaacataagttgtatccacagaacaaaatcagttttgctaattcaattagctaacggggaaaggacctaccatcaaatgtacatgaaagaataa |
27507308 |
T |
|
| Q |
274 |
gggaaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatcc |
373 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
27507309 |
gggaaaaaaatatgattcaaagaacaagtgtgtgctactcatgcgactttgataacgcctattaagagttatttggaataacatgcacatcagatgatcc |
27507408 |
T |
|
| Q |
374 |
agacgattataacttttttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaaga |
473 |
Q |
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| T |
27507409 |
agacgattataacttttttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaaga |
27507508 |
T |
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| Q |
474 |
gagaaataattgttttcatttaatgaccgtcttacgattctatattgaacaattgtcatactggagcctttg |
545 |
Q |
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| T |
27507509 |
gagaaataattgttttcatttaatgaccgtcttacgattctatattgaacaattgtcatactggagcctttg |
27507580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 236 - 477
Target Start/End: Original strand, 27502259 - 27502500
Alignment:
| Q |
236 |
gggaaaggacctaccatcaaatgtacatgaaagaataagggaaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttt |
335 |
Q |
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||||||||| ||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||| | ||||| |
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| T |
27502259 |
gggaaaggaattaccaccaaattaacatggaagaataaggaaaaagaatatgattcaaagaacaagtgtgtactattcaagcgattttgatatcaccttt |
27502358 |
T |
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| Q |
336 |
taagcgttatttggaataacatgcacatcagatgatccagacgattataacttttttaggcattaacagagtgaaattaaaatattgttagagtgcactt |
435 |
Q |
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| T |
27502359 |
gaagtgttatttggagcaacatgcagatcagatgacccagacgattataactattttaggcattaacagactgaaattaaaattttgttagagagcactt |
27502458 |
T |
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| Q |
436 |
gtagtgaaatgttaacattggacaatttcttttcaagagaga |
477 |
Q |
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| T |
27502459 |
gtagtgaaatcttaacattagacaatttcttttcaagagaga |
27502500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 277 - 505
Target Start/End: Complemental strand, 27484804 - 27484577
Alignment:
| Q |
277 |
aaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatcagatgatccaga |
376 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| |||||||| ||||||||| ||| | |
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| T |
27484804 |
aaaataatatgactcaaagaacaagtgtgtgctattcatgcgacttggataatgcctttgaagcattatttggagcaacatgcagatcagatgacccaaa |
27484705 |
T |
|
| Q |
377 |
cgattataacttttttaggcattaacagagtgaaattaaaatattgttagagtgcacttgtagtgaaatgttaacattggacaatttcttttcaagagag |
476 |
Q |
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| T |
27484704 |
caattataacttttttaggcattaacagactgaaattaaaatgttgttagattgcatttgtagtgaaatgttaacattggacagtttcttttcaaaagag |
27484605 |
T |
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| Q |
477 |
aaataattgttttcatttaatgaccgtct |
505 |
Q |
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| T |
27484604 |
aaattaat-ttttcattcaatgatcgtct |
27484577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 27485634 - 27485571
Alignment:
| Q |
119 |
aaatttgacagtaaaaataatatgaacagtcagtgcagagctaaacttatttttcagaaccaaa |
182 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
27485634 |
aaatttcacagtaaaaataatatgaacagtcagtgcagagctaaagttatttttcagatccaaa |
27485571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 10693150 - 10693191
Alignment:
| Q |
11 |
cataggtacgtatcattttcttgtataaactatttctattac |
52 |
Q |
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| T |
10693150 |
cataggtacgtatcattttcttgtataaactatttctattac |
10693191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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