View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_6 (Length: 493)
Name: NF11850_low_6
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 45552871 - 45552392
Alignment:
| Q |
1 |
aatgattagaaaggaagttcaggcatcctctattgtagaaaaaatgatagagtctcatctcagatggtttgtagctcgtagatgcatgagtgaggattca |
100 |
Q |
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| T |
45552871 |
aatgattagaaaggaagttcaggcatcctctattgtagaaaaaatgatag--tctcatctcagatggtttgtagctcgtagatgcatgagtgaggattca |
45552774 |
T |
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| Q |
101 |
gcttctcttcttaagttattttcttaatcattttaatctgtttgtaaaattgataatacatgttttaggattcagcttttcttcttaagttattatttta |
200 |
Q |
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| T |
45552773 |
gcttctcttcttaagttattttcttaatcattttaatctgtttgtaaaattgataatacatgttttaggattcagtttttcttcttaagttattatttta |
45552674 |
T |
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| Q |
201 |
acgtatgaacagttgtttcaaatagtcagcattaatctaagtttttatctagttaatttatgaaaaaatgcagaaaggttggtgtctactaagttaggag |
300 |
Q |
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| T |
45552673 |
acgtatgaacagttgtttcaaatagtcagcattaatctaagtttttatctagttaatttatgaaaaaatgcagaaaggttggtgtctactaagttaggag |
45552574 |
T |
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| Q |
301 |
tcttgaaaagtaacattttctaacagcaacattatttggaaagtgacactaaattactgcaaattaagttcttctacttgaaaacggctctgtggcctta |
400 |
Q |
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| T |
45552573 |
tcttgaaaagtaacattttctaactgcaacattatttggaaagtgacactaaattacttcaaattaagttcttctacttgaaaacggctctgtggcctta |
45552474 |
T |
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| Q |
401 |
ccataccattttggcacaattaataacaagttctaatgtcgactcacacccttaattattcgatcatctacagaaaaagaaccaaactagaca |
493 |
Q |
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| T |
45552473 |
acatacca-tttggc----------acaagttctaatgtcgactcacacccttaattattcgatcatctacagaaaaagaaccaaactagaca |
45552392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 45547504 - 45547455
Alignment:
| Q |
125 |
taatcattttaatctgtttgtaaaattgataatacatgttttaggattca |
174 |
Q |
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| T |
45547504 |
taatcatcttaatttgtttgtaaaattgataatgcatgttttaggattca |
45547455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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