View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_7 (Length: 476)
Name: NF11850_low_7
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 30173259 - 30172908
Alignment:
| Q |
18 |
aattactctaacctctatcacactctttatatacacatacatgtatgt--------gtgtgtcttaatctcaatactatactagttaattaataaagtat |
109 |
Q |
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| T |
30173259 |
aattactctaacctctatcacactctttatatacacatacatgtatgtatgtatgtgtgtgtcttaatctcaatactatactagttaattaataaagtat |
30173160 |
T |
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| Q |
110 |
tttatttaatgtcacatggtgnnnnnnnnatccaatctatgacctttttgatggatcataatatatactgtatatgcttgagatcggttttggatgtccg |
209 |
Q |
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| T |
30173159 |
tttatttaatgtcacatggtgttttttttatccaatctatgacctttttgatggatcataatatatactgtatatgcttgagatcggttttggatgtccg |
30173060 |
T |
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| Q |
210 |
catattccatccactggctgtggcatgttctcttctggaaacataatatgggaatgaatgattaacttccttaacttgattaaacatatatggtacattc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30173059 |
catattccatccactggctgtggcatgttctcttctggaaacataatatgggaatgaatgattaacttccttaacttgattaaacatatatggtacattc |
30172960 |
T |
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| Q |
310 |
caaaataaagtgcgaattttattttcttaaagtcaataatcttgtcctggtc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30172959 |
caaaataaagtgcgaattttattttcttaaagtcaataatcttgtcctggtc |
30172908 |
T |
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