View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11850_low_9 (Length: 469)
Name: NF11850_low_9
Description: NF11850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11850_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 41641365 - 41641806
Alignment:
| Q |
1 |
gatacgcagtggatggactacgagcatgtgcatttctgtcccacaacatctttacattgaatcttgctactcactctctgctttaacttttaccaatcgt |
100 |
Q |
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| T |
41641365 |
gatacgcagtggatggactacgagcatgtgcatttctgtcccacaacatctttacattgaatcttgctactcactctctgctttaacttttaccaatcgt |
41641464 |
T |
|
| Q |
101 |
gggtttactttatatatcatgttaaatctatctattgcataaaatatgtgtatagatttttggagaattatggtaaactccattgaggttatagagattc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641465 |
gggtttactttatatatcatgttaaatct----attgcataaaatatgtgtatggatttttggagaattatggtaaactccattgaggttatagagattc |
41641560 |
T |
|
| Q |
201 |
tccacataattagtggaccatatatcctctgatgtctataatgcagtgattgttttcctttcactttcttttaccttctaaacagaacattaattaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41641561 |
tccacataattagtggaccatatatcctctgatgtctataatgcagtgattgttttcctttcactttcttttaccttctaaacagaac----attaatat |
41641656 |
T |
|
| Q |
301 |
tgccaagctttttgttttggcaagtattttcccatgcatttgacaaaagagagatattagtattagtattctacacaagtaagccgtgtgcgagcacaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641657 |
tgccaagctttttgttttggcaagtattttcccatgcatttgacaaaagagagatattagtattagtattctacacaagtaagccgtgtgcgagcacaaa |
41641756 |
T |
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| Q |
401 |
agtggaaatataaaaccaagtggagtggtaaaggttttatgtggggtagg |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641757 |
agtggaaatataaaaccaagtggagtggtaaaggttttatgtggggtagg |
41641806 |
T |
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