View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_high_1 (Length: 1204)
Name: NF11851_high_1
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 1135; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1135; E-Value: 0
Query Start/End: Original strand, 20 - 1190
Target Start/End: Complemental strand, 13959442 - 13958272
Alignment:
| Q |
20 |
ttaatagcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttgacagttgcttcagcaagaagtcgtctttgccctt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13959442 |
ttaatagcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttaacagttgcttcagcaagaagtcgtctttgccctt |
13959343 |
T |
|
| Q |
120 |
cgctaacccatgaaggataaccattatcaagtgacaaaagcctccttttagcattagttaaatcataaacagcatcaaccatgtcaatagcattactact |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13959342 |
cgctaacccataaaggataaccattatcaagtgacaaaagcctccttttagcattagttaaatcataaacagcatcaaccatgtcaatagcattactgct |
13959243 |
T |
|
| Q |
220 |
taattggatagacgtgttcaaagccctagccattgtttcaccggattttgttgttgtatttgcaaaaccatccaaacatgtttgttgatgagaaagtgta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13959242 |
taattggatagacgtgttcaaagccctagccattgtttcaccggcttttgttgttgtatttgcaaaaccatccaaacatgtttgttgatgagaaagtgta |
13959143 |
T |
|
| Q |
320 |
ccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccactgcaccaacagatttatgaattccatcaacagcat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13959142 |
ccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccactgcaccaacagatttatgaattccatcaacagcat |
13959043 |
T |
|
| Q |
420 |
aatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataagagatgaactgtttatgtgtttcaataactc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13959042 |
aatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataagagatgaactgtttatgtgtttcaataactc |
13958943 |
T |
|
| Q |
520 |
ctctgatgttgcactgaaagctgctttgataaggtctttcactccagccgtttcggccggtgcttttgcaagactttggtgacatgtttgttgatattgt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13958942 |
ctctgatgttgcactgaaagctgctttgataaggtctttcactccagccgtttcggccggtgcttttgcaagactttggtgacatgtttgttgatattgt |
13958843 |
T |
|
| Q |
620 |
gttgattcacatagaatctgaacgtttggttgtccttgttgtgcatcagcaacggtggcgaccatagctacaagaagtatggaagaaacaccaacaagtg |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13958842 |
gttgattcacatagaatctgaacgtttggttgtccttgttgtgcatcagcgacggtggcgaccatagctacaagaagtatggaagaaacaccaacaagtg |
13958743 |
T |
|
| Q |
720 |
caaaccttttactttggtcatgaccaccattataacgtgttcctcccatatttcaaaatgccctatcaagagggcttggtcttactctaagttcttaatt |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13958742 |
caaaccttttactttggtcatgaccaccattataacgtgttcctcccatatttcaaaatgccctatcaagagggcttagtcttactctaagttcttaatt |
13958643 |
T |
|
| Q |
820 |
tgtgacattgattctatatatttacatgtatagaactaattttaccacaaaatgtatgttaatttaccttgtcaaacggaaaaatagttgggaatctgtt |
919 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13958642 |
tgtgacattgattctatatattcacatgtatagaactaattttaccacaaaatgtatgttaatttaccttgtcaaacggaaaaatagttgggaatctgtt |
13958543 |
T |
|
| Q |
920 |
acaaaaatcgtgttattgtaatacttaactcctaaacttggattataacattagctaaaattagtaactggccaattttggcattaaattgttaagtaaa |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13958542 |
acaaaaatcgtgttattgtaatacttaactcctaaacttggattataacattagctaaaattagtaactggccaattttggcattaaattgttaagtaaa |
13958443 |
T |
|
| Q |
1020 |
gtgataattataattgattagaggatgtcattgaatcgtggaattgattacacgtgcgtgcatgcatagtctttgcagtttgttgttgttacatggtcat |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13958442 |
gtgataattataattgattagaggatgtcattgaatcgtggaattgattatacgtgcgtgcatgcatagtctttgcagtttgttgttgttacatggtcat |
13958343 |
T |
|
| Q |
1120 |
ggtcctcatggatatgttacgttaggtatttgaattgttatttggtactccttaaatgatcagtgtgatgt |
1190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13958342 |
ggtcctcatggatatgttacgttaggtatttgaattgttatttggtactccttaaatgatcagtgttatgt |
13958272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 186 - 559
Target Start/End: Complemental strand, 13976994 - 13976621
Alignment:
| Q |
186 |
aaacagcatcaaccatgtcaatagcattactacttaattggatagacgtgttcaaagccctagccattgtttcaccggattttgttgttgtatttgcaaa |
285 |
Q |
| |
|
||||| |||| | ||||||||| |||||||||||||||| ||||| || |||||| || ||| |||||||||||| | |||||||||||||||| |||| |
|
|
| T |
13976994 |
aaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgttgttgtatttacaaa |
13976895 |
T |
|
| Q |
286 |
accatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccact |
385 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||| ||||||| || ||||| | |||||||| |||| | |
|
|
| T |
13976894 |
accatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaat |
13976795 |
T |
|
| Q |
386 |
gcaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaa |
485 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
13976794 |
gtaccaacagatttatgaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttgat |
13976695 |
T |
|
| Q |
486 |
taagagatgaactgtttatgtgtttcaataactcctctgatgttgcactgaaagctgctttgataaggtctttc |
559 |
Q |
| |
|
||| | |||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
13976694 |
aaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcactgaaagctgctttgataagctctttc |
13976621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 7e-83
Query Start/End: Original strand, 186 - 550
Target Start/End: Complemental strand, 13966826 - 13966462
Alignment:
| Q |
186 |
aaacagcatcaaccatgtcaatagcattactacttaattggatagacgtgttcaaagccctagccattgtttcaccggattttgttgttgtatttgcaaa |
285 |
Q |
| |
|
||||| |||| | ||||||||| |||||||||||||||| ||||| || |||||| || ||| |||||||||||| | ||||||| |||||||| |||| |
|
|
| T |
13966826 |
aaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgtttttgtatttacaaa |
13966727 |
T |
|
| Q |
286 |
accatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccact |
385 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||| ||||||| || ||||| | |||||||| |||| | |
|
|
| T |
13966726 |
accatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaat |
13966627 |
T |
|
| Q |
386 |
gcaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaa |
485 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| | | ||||||||| |
|
|
| T |
13966626 |
gtaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgat |
13966527 |
T |
|
| Q |
486 |
taagagatgaactgtttatgtgtttcaataactcctctgatgttgcactgaaagctgctttgata |
550 |
Q |
| |
|
||| | |||| |||||||||||||| ||| |||||| |||||||| |||||| |||||||| |
|
|
| T |
13966526 |
aaagtgctgaattgtttatgtgtttccgtaattcctcttctgttgcacccaaagctcctttgata |
13966462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 13967013 - 13966897
Alignment:
| Q |
20 |
ttaatagcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttgacagttgcttcagcaagaagtcgtctttgccctt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| ||| || | |||||||||| |||| ||||| | |
|
|
| T |
13967013 |
ttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaagatgtctatgcccgt |
13966914 |
T |
|
| Q |
120 |
cgctaacccatgaagga |
136 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
13966913 |
cactaacccatgaagga |
13966897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 13977181 - 13977065
Alignment:
| Q |
20 |
ttaatagcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttgacagttgcttcagcaagaagtcgtctttgccctt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||| ||| || | |||||||||| |||| ||||| | |
|
|
| T |
13977181 |
ttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcatcagctttaacatttccaccagcaagaagatgtctatgcccgt |
13977082 |
T |
|
| Q |
120 |
cgctaacccatgaagga |
136 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
13977081 |
cactaacccatgaagga |
13977065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University