View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_11 (Length: 606)
Name: NF11851_high_11
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 12 - 587
Target Start/End: Original strand, 33750434 - 33751015
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750434 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
33750533 |
T |
|
| Q |
112 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagcagtcagaa |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750534 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagcagtcagaa |
33750633 |
T |
|
| Q |
212 |
gtggttgctcctgatttagagaatgtaaaagatga------gaatgagaacgagaatatgaatcaagaaattcaaagtgagacaaatatgggatttggga |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
33750634 |
gtggttgctcctgatttagagaatgtaaaagatgagaatgagaatgagaacgagaatatgaatcaagaaatgcaaagtgagacaaatattggatttggga |
33750733 |
T |
|
| Q |
306 |
ataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750734 |
ataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaac |
33750833 |
T |
|
| Q |
406 |
tgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750834 |
tgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttc |
33750933 |
T |
|
| Q |
506 |
gctttgcaacaatgtgcataatctttcttccactagattttttcggaggaggaagttgccttgccagctgcaagtgcaaatc |
587 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
33750934 |
gctttgcaacaatgtgcataatctttcttccactagattttttcggaggaggaagttaccatgccagctgcaagtgcaaatc |
33751015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 33718963 - 33719153
Alignment:
| Q |
14 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcggagg |
113 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
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| T |
33718963 |
agaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggagg |
33719062 |
T |
|
| Q |
114 |
aagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagca |
204 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||| | |||||||| || |||||||| |
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| T |
33719063 |
aagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagca |
33719153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 33735634 - 33735824
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
111 |
Q |
| |
|
||||||||||||| || || |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||| |||||||||| |
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|
| T |
33735634 |
acagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcgga |
33735733 |
T |
|
| Q |
112 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaag |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||| | |||||||| || |||||| |
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|
| T |
33735734 |
ggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
33735824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 33720980 - 33721171
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
111 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||||||||| |
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|
| T |
33720980 |
acagaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcgga |
33721079 |
T |
|
| Q |
112 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagc |
203 |
Q |
| |
|
||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||||| || ||||||||| | |||||||| || ||||||| |
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|
| T |
33721080 |
ggaagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaagc |
33721171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 255 - 419
Target Start/End: Original strand, 33735871 - 33736035
Alignment:
| Q |
255 |
acgagaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttca |
354 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||||||||||| || ||||| | ||||||||||||||||||| | || ||| |||||||||| |
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|
| T |
33735871 |
acgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttca |
33735970 |
T |
|
| Q |
355 |
acaactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacactttta |
419 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||| |
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|
| T |
33735971 |
acaactaatgaggtttatggattttgatagagattcttctgactcaagaacatggaacactttta |
33736035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 257 - 452
Target Start/End: Original strand, 33719203 - 33719398
Alignment:
| Q |
257 |
gagaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaac |
356 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| | ||| |||| |||||||| |||||||||||||| |||||| |||| ||| |||||||||||| |
|
|
| T |
33719203 |
gagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttttggatagcattggtgaacctgattttcaac |
33719302 |
T |
|
| Q |
357 |
aactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagt |
452 |
Q |
| |
|
|| | |||| ||||||||| ||| |||||||||||||| ||| || || ||||| |||||||||||||| |||| |||||||||| ||||||| |
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|
| T |
33719303 |
aatttatgaagtttatggaattttctggagattcttctggttctaggacagggaatccttttaattagttcatgaattcaacaacaaatgaacagt |
33719398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 454
Target Start/End: Original strand, 33721214 - 33721392
Alignment:
| Q |
270 |
aagaaattcaaagtgagacaaatatgggatttgggaataatatg---gattgtgatttttgggataggcttggggaaa---ctgattttcaacaactgat |
363 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||||||| || |
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|
| T |
33721214 |
aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttat |
33721313 |
T |
|
| Q |
364 |
gaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagtta |
454 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| || |||||||||||||||||||| || |||||||||| ||||||||| |
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|
| T |
33721314 |
gaggtttatg------------gattcttctcattctagaacaggaaacacttttaattagttcctcaattcaacaacaacagaacagtta |
33721392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
| Q |
14 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
66 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6583050 |
agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc |
6583102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
| Q |
14 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
66 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6568891 |
agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 32575066 - 32575155
Alignment:
| Q |
296 |
ggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtgga |
385 |
Q |
| |
|
|||||| | ||| ||||||||||||| |||||||||| | |||||||| ||| |||| ||| | |||||||||||||||||||||||| |
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|
| T |
32575066 |
ggatttagaaatgatatggattgtgaattttgggatatgattggggaaggtgaatttcggcaagttatgaggtttatggattttggtgga |
32575155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 13409876 - 13409921
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaat |
57 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
13409876 |
acagaggagtgagacaaagaccatggggaaaatgggcagcagaaat |
13409921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 44331914 - 44331866
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcg |
60 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| || |||||||| |
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|
| T |
44331914 |
acagaggagtaagacagagaccatggggaaaatgggcagcagaaattcg |
44331866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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