View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_14 (Length: 515)
Name: NF11851_high_14
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 6 - 496
Target Start/End: Complemental strand, 8722589 - 8722103
Alignment:
| Q |
6 |
agcaaaggaaagttggataatataatggttagtgtctttctcgatgcttatttaattcctttatgacaactattttggttgcttaagcattataatttat |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8722589 |
agcaaaggaaagttggataatataatggttagtgtctttctcgatgcttatttaattcctttatgacaactattttggttgcttaagcattataatttat |
8722490 |
T |
|
| Q |
106 |
accatagcttaattaattaaatgcaacttgtgttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggcca |
205 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8722489 |
accatagcttaattaa----atgcaacttgtgttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggcca |
8722394 |
T |
|
| Q |
206 |
caatttgtaccttgtacaaaatgtcagaaaatatactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaagtcat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8722393 |
caatttgtaccttgtacaaaatgtcagaaaatatactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaagtcat |
8722294 |
T |
|
| Q |
306 |
gtatttgttaatataatttatcaaattagaacttttgcaaaatgtaactattgnnnnnnncattttgcacataggtaccccaatatgtcaattggagata |
405 |
Q |
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| T |
8722293 |
gtatttgttaatataatttatcaaattagaacttttgcaaaatgtaattattgtttttttcattttgcacataggtaccccaatatgtcaattggagata |
8722194 |
T |
|
| Q |
406 |
tcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggtttaatttatcataat |
496 |
Q |
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| T |
8722193 |
tcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggtttaatttatcataat |
8722103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 490
Target Start/End: Complemental strand, 8594399 - 8593937
Alignment:
| Q |
6 |
agcaaaggaaagttggataatataatggttagtgtctttctcgatgcttatttaattcctttatgacaactattttggttgcttaagcattataatttat |
105 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
8594399 |
agcaaaggaaaattggataatataatggttagtgt-tttctcaatgc-------------ttatgacaactattttggtagcttaagcattataatttat |
8594314 |
T |
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| Q |
106 |
accatagcttaattaattaaatgcaacttgtgttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggcca |
205 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8594313 |
accatag----tttaattaaatgcaacttgtgttaaataattgcaggacatcaaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggcca |
8594218 |
T |
|
| Q |
206 |
caatttgtaccttgtacaaaatgtcagaaaatatactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaa-gtca |
304 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
8594217 |
caatttgtaccttgcacaaaatgtcagaaaatgtattgtttaacatgtattaaacattggtacgttttaga-tacatctaaataaccattccaaaggtca |
8594119 |
T |
|
| Q |
305 |
tgtatttgttaatataatttatcaaattagaacttttgcaaaatgtaactattgnnnnnnncatttt-gcacataggtaccccaatatgtcaattggaga |
403 |
Q |
| |
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| T |
8594118 |
catatttgttaatataatttatgaaattataac-tttgcaaaatgtgactatt----ttttcattttcgcatataggtaccccaatatgtcaattggaga |
8594024 |
T |
|
| Q |
404 |
tatcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggtttaatttat |
490 |
Q |
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||| |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8594023 |
tattgcagagaggtgcccattttgtcgtaagaattgcaattgcaatgtttgcttgtgttcaagaggaatgatcaaggtttaatttat |
8593937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 496
Target Start/End: Complemental strand, 8677327 - 8677276
Alignment:
| Q |
445 |
gcaatgtttgcttgggttcaagaggaatgatcaaggtttaatttatcataat |
496 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||||| | |||||||||||| |
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| T |
8677327 |
gcaatgtttgcttgtgttccagaggaatgatcaaggtgtcatttatcataat |
8677276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 37 - 492
Target Start/End: Original strand, 21239488 - 21239942
Alignment:
| Q |
37 |
gtgtctttctcgatgcttatttaattcctttatgacaactattttggttgcttaagcattataatttataccatagcttaattaattaaatgcaacttgt |
136 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21239488 |
gtgtctttctcgatgcttattttattcctttatgagaactattttggttgcttaagcattataatttataccatagcttaa----ttaaatgcaacttgt |
21239583 |
T |
|
| Q |
137 |
gttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgtacaaaatgtcagaaaa |
236 |
Q |
| |
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|||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21239584 |
gttaaataattaaaggaaaccgaacaaaatatcaaaacatgtcatcaatgcttgagaaaggataggccacaatttgtaccttgaacaaaatgtcagaaaa |
21239683 |
T |
|
| Q |
237 |
tatactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaagtcatgtatttgtta--atataatttatcaaattag |
334 |
Q |
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|||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| |||||| |
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| T |
21239684 |
tatattgttttagatgcattaaacaatggtatgttttagattacatctaaatagccatttcaaagtcatgtatttgttaatatataacttatccaattag |
21239783 |
T |
|
| Q |
335 |
aacttttgcaaaatgtaactattgnnnnnnnca-ttttgcacataggtaccccaatatgtcaattggagatatcagagagaggtgccccttttgccgtaa |
433 |
Q |
| |
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||||||| ||||||||||| | || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
21239784 |
aacttttcataaatgtaactactttttttttcatttttgcacataggtaccccaatatgtcagttggagatatcggagagaggtgccccttttgctgtaa |
21239883 |
T |
|
| Q |
434 |
gaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggtttaatttatca |
492 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
21239884 |
gaattggaattgcaatgtttgcttgtgttcaagaggaatgatcaaagtttaatttatca |
21239942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 1778394 - 1778305
Alignment:
| Q |
123 |
taaatgcaacttgtgttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgta |
214 |
Q |
| |
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|||||||||||||||||||||||| ||| || || |||| ||| | |||||||||||||| ||||||| ||| || | |||||| |||||| |
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| T |
1778394 |
taaatgcaacttgtgttaaataattacaagacaccgaac--aatgtaaaaacatgtcatcactgcttgaaaaatgacatgccacagtttgta |
1778305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 55413237 - 55413165
Alignment:
| Q |
417 |
tgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggtttaattta |
489 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||| || |||||| ||||| || |||||||| |||| |
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| T |
55413237 |
tgcccattttgcattaaaaattgcaattgcaatgtttgcctgcgttcaaaaggaacaattaaggtttacttta |
55413165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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