View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_15 (Length: 498)
Name: NF11851_high_15
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 3246591 - 3247087
Alignment:
| Q |
1 |
tcaaacattttaacgctgcgatctagatcacactagtggaccttggtagaaaacatctagagcacgaggttcgtagaattaggataaaaagacacaattg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3246591 |
tcaaacattttaacgccgcgatctagatcacactagtggaccttggtagaaaacatctagagcacgaggttcgtagaattaggataaaattacacaattg |
3246690 |
T |
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| Q |
101 |
ttttctagtttaattagatgtctcgagtttgtgttttgaaaatgcaacaaggttggaatgtttcgagggtcgtgataccttatttatatagaaaaagata |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3246691 |
ttt-ctagtttaattagatgtctcgagtttgtgttttgaaaatgcaacaaggttggaatatttcgagggtcgtgataccttatttatatagaaaaagata |
3246789 |
T |
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| Q |
201 |
tttgtcacatcttagatatattttgatattacattatcattcaactcgatctaaaagctagctcatgggtccgggttacccccgcttgtaagggactctc |
300 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
3246790 |
tttatcacatcttagatagattttgatattacattatcattcaactcgatctaaaagctagctcatgggacagggttacccccgcttgtaagggactctc |
3246889 |
T |
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| Q |
301 |
aacatgatctagctttatttgataaatggtgtaagaaaattgcaactttcacatttgttttttagtttggggtgaaaaataaaacatgatttgttatatg |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3246890 |
aacgtgatctagctttatttgataaatggtgtaagaaaattgcaactttcacatttgttttttagtttggggtgaaaaataaaacatgatttgttatatg |
3246989 |
T |
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| Q |
401 |
atgatggtttctaagtacatgttgcttatttgcattaattgttcttctgttgtgttttcagataatgctgatgacaataaacatgatgcctctagtgc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3246990 |
atgatggtttctaagtacatgttgcttatttgcattaattgttcttctgttgtgttttcagataatgctgatgacaataaacatgatgcctctagtgc |
3247087 |
T |
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