View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_17 (Length: 482)
Name: NF11851_high_17
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 475
Target Start/End: Complemental strand, 45173843 - 45173388
Alignment:
| Q |
20 |
aatgtaacttactaatataactaatctttatacataataccgtaattttgttgaaaatctaaggtgtatagtttttgtcaaatctacattgttgatttgt |
119 |
Q |
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| T |
45173843 |
aatgtaacatgctaatataactaatctttatacataataccgtaattttgttgaaaatctaaggtgtatagtttttgtcaaatctacattgttgatttgt |
45173744 |
T |
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| Q |
120 |
cacacagtaatttggttaaactcgcagtaaatacaaacatgcactaaattttgctttctagcaaattggaaatgccttaaaaagtatggagnnnnnnnnn |
219 |
Q |
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| T |
45173743 |
cacacagtaattttgttaaactcgcagtaaatacaaacatgcactaaattttgctttctagcaaattggaaatgccttaaaaagtatggagttttttttt |
45173644 |
T |
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| Q |
220 |
gttaagggataaaaagtttggacctatcctgttttatttttcccctttcacgaaaagtgtttaaagtgttatcttgggacatataaacctgaggaaggga |
319 |
Q |
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| T |
45173643 |
gttaagggataaaaagtttggagctatcctgttttatttttcccctttcacgaaaagtgtttaaagtgttatcttgggacatataaacctgaggaaggga |
45173544 |
T |
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| Q |
320 |
tatttcagttttatgttataccgtgttcatactcttatcattcatgttttcgtcggttttaagaatataaagataaaaagaataaactcgattgaacaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45173543 |
tatttcagttttatgttataccgtgttcatactcttatcattcatgttttcgtcggttttaagaatataaagataaaaagaataaactcgattgaacaat |
45173444 |
T |
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| Q |
420 |
gtccataccttcaataaattgaaagacaacaatatccaacgaccatacctatgctt |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45173443 |
gtccataccttcaataaattgaaagacaacaatatccaatgaccatacctatgctt |
45173388 |
T |
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