View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_high_2 (Length: 799)

Name: NF11851_high_2
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_high_2
NF11851_high_2
[»] chr2 (1 HSPs)
chr2 (6-782)||(6617935-6618713)


Alignment Details
Target: chr2 (Bit Score: 727; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 6 - 782
Target Start/End: Original strand, 6617935 - 6618713
Alignment:
Q  6 agcagcacagattcacccatgagacgaagggaatagtgttttcagtaagcgaaacgacacaaagggtcccagtatataaagtggaaacaggttttattgc 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6617935 agcatcacagattcacccatgagacgaagggaatagtgttttcagtaagcgaaacgacacaaagggtcccagtatataaagtggaaacaggttttattgc 6618034  T
Q  106 cagtccag-tcagaattcacccagaaaagctttccaaaacaatctgacctgtttactgaaatcggaagggaaaaaacatgtgattgcacgaagtttttcc 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6618035 cagtccaggtcagaattcacccagaaaagctttccaaaacaatctgacctgtttactgaaatcggaagggaaaaaacatgtgattgcacgaagtttttcc 6618134  T
Q  205 gtggcaatttcacatgatcttacccaaacctgattctgcatacacaggaaatcggctagcacccatgaaattgtagacttttacaagtgttttaaatcga 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6618135 gtggcaatttcacatgatcttacccaaacctgattctgcatacacaggaaatcggctagcacgcatgaaattgtagacttttacaagtgttttaaatcga 6618234  T
Q  305 gattttaactacaattatcacaactctttaatgcttctctgaaaatcaaagtattgataacaagcaagggtagataaaaatatttcttttaattactact 404  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6618235 gattttaactgcaattatcacaactctttgatgcttatctgaaaatcaaagtattgatgacaagcaagggtagataaaaatatttcttttaattactact 6618334  T
Q  405 caatagcacttaaatattcaaccagatttaatgacacataataactgaattacataaattggatttgaacaggaaattttttgacaattttatgatatta 504  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6618335 caatagcacttaaatattcaaccagacttaatgacacataataactgaattacataaattggatttgaacaggaaaatttttgacaattttatgatatta 6618434  T
Q  505 aaat-aaaaagataaacgcctcagcatgacaatctgaatcactaaataaatagtctaggaactccgcctggatgttcaattatttaatgccggtttgttt 603  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6618435 aaataaaaaagataaacgcctcagcatgacaatctgaatcactaaataaatagtctaggaactccgcctggatgttcaattatttaatgccggtttgttt 6618534  T
Q  604 ttacaatttccttgccatataaacaaaatttggtcacacccttgaaaacttaaaagaacttgaaactttgacgcagtgaaggtatattatctgtgatgta 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6618535 ttacaatttccttgccatataaacaaaatttggtcacacccttgaaaacttaaaagaacttgaaactttgacgcaatgaaggtatattatctgtgatgta 6618634  T
Q  704 atgtggatggtaaatctaattaactctgagcaataacagaaaaaagacatgcaatgttacgacatagcataatagtagt 782  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6618635 atgtggatggtaaatctaattaactctgagcaataacagaaaaaagacatgcaatgttacgacatagcataatagtagt 6618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University