View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_high_25 (Length: 437)

Name: NF11851_high_25
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_high_25
NF11851_high_25
[»] chr1 (22 HSPs)
chr1 (15-420)||(27777499-27777902)
chr1 (43-420)||(27782085-27782462)
chr1 (44-156)||(38226776-38226888)
chr1 (187-397)||(27781156-27781385)
chr1 (289-420)||(27781016-27781156)
chr1 (259-328)||(38226961-38227030)
chr1 (42-133)||(17700129-17700220)
chr1 (289-395)||(27781080-27781195)
chr1 (359-409)||(38226992-38227042)
chr1 (358-420)||(38227135-38227197)
chr1 (265-322)||(17663585-17663642)
chr1 (358-410)||(38227063-38227115)
chr1 (364-420)||(38227213-38227269)
chr1 (262-322)||(21899127-21899187)
chr1 (50-121)||(17663772-17663843)
chr1 (358-420)||(17663556-17663618)
chr1 (265-315)||(17700337-17700387)
chr1 (49-133)||(21898914-21898997)
chr1 (121-164)||(27781396-27781439)
chr1 (275-330)||(38227049-38227104)
chr1 (358-420)||(17700361-17700423)
chr1 (366-403)||(21079010-21079047)
[»] chr4 (6 HSPs)
chr4 (50-328)||(35249931-35250217)
chr4 (358-408)||(35250178-35250228)
chr4 (262-322)||(51220007-51220067)
chr4 (263-322)||(51220795-51220854)
chr4 (358-420)||(51220034-51220096)
chr4 (364-420)||(51220827-51220883)
[»] chr7 (2 HSPs)
chr7 (262-328)||(440901-440967)
chr7 (359-410)||(440929-440980)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 27777902 - 27777499
Alignment:
Q  15 aagcatctccatcaatttcaaccctcaatttagtttcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaacttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  27777902 aagcatctccatcaatttcaaccctcaatttagtttcactcaaacaaaacaagaagattaagacaaatgtaaaagatggaaattgataaactaaacttta 27777803  T
Q  115 tatatatcttgtaagcaaattgcttaataactcatgatgatatgctttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattc 214  Q
    |||||||||||||||||||||||| ||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27777802 tatatatcttgtaagcaaattgctcaataattcatgatgatat--tttaactagaagaattgttattaaagaaaattacatgacaacatcaagggtattc 27777705  T
Q  215 atcccatacaaaattcaaaatatcattcaaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaat 314  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27777704 atcccatacaaaattcataatatcattcaaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaat 27777605  T
Q  315 ctaaattcttcacatcatcacatggaagctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttc 414  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777604 ctaaattcttcacatcatcacttgtaagctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttc 27777505  T
Q  415 tgtttc 420  Q
    ||||||    
T  27777504 tgtttc 27777499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 43 - 420
Target Start/End: Original strand, 27782085 - 27782462
Alignment:
Q  43 tttagtttcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaattgcttaat 142  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  27782085 tttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaattgctcaat 27782184  T
Q  143 aactcatgatgatatgctttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcaaaatatcattc 242  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27782185 aattcatgatgatatactttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattc 27782284  T
Q  243 aaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatggaag 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||    
T  27782285 aaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcacatcatcacttgaaag 27782384  T
Q  343 ctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782385 ctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 27782462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 38226776 - 38226888
Alignment:
Q  44 ttagtttcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaattgcttaata 143  Q
    ||||||| ||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38226776 ttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaata 38226875  T
Q  144 actcatgatgata 156  Q
    | |||||||||||    
T  38226876 attcatgatgata 38226888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 397
Target Start/End: Complemental strand, 27781385 - 27781156
Alignment:
Q  187 aaattacatgacaacatcaagggtattcatcccatacaaaattcaaaatatcattcaaaatcat----------taaaccaagacgagacactaattggt 276  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||          ||||| |||||||||| |||| |       
T  27781385 aaattacatgacaacatcaagggtatccatcccataaaaaattcataatatcattcaaaatcattaaaaagatataaactaagacgagacgctaaatatc 27781286  T
Q  277 ttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatgga---------agctcaaaattcatcacatcattactt 367  Q
    |||||||||| ||| ||  ||||||| | ||||| |||| ||||||||||||||||||  ||||         |  ||||||||| ||||||||| ||||    
T  27781285 ttcatcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcacatcatcaattggatactcgttcaaatcaaaattcttcacatcatcactt 27781186  T
Q  368 ggaagctcgttcaaatcaaaattcttcaca 397  Q
    ||||||| ||||||||||||||||||||||    
T  27781185 ggaagcttgttcaaatcaaaattcttcaca 27781156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 27781156 - 27781016
Alignment:
Q  289 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatggaagctc---------aaaattcatcacatcattacttggaagctcgttc 379  Q
    ||||||| ||||| ||||||||||||| ||||||||| ||||||||| |||||||||         ||||||| ||| ||||| |||||||||||||| |    
T  27781156 atcatcaattggatactcgttcaaatcaaaattcttcgcatcatcacttggaagctcgttcaaatcaaaattcttcatatcatcacttggaagctcgtcc 27781057  T
Q  380 aaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  27781056 aaatcaaaattcttcacaacttttgaccctaattttgtttc 27781016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 38226961 - 38227030
Alignment:
Q  259 gacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 328  Q
    |||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  38226961 gacgagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcaca 38227030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 17700129 - 17700220
Alignment:
Q  42 atttagtttcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaa 133  Q
    |||||| ||||| |||||||||  |||||||||||||||    ||||||||||||||||||| ||||| |||||||||||| ||| ||||||    
T  17700129 atttagattcacacaaacaaaattagaagattaagacaaccacaaaaggtggaaattgataatctaaaatttatatatatcgtgtcagcaaa 17700220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 395
Target Start/End: Complemental strand, 27781195 - 27781080
Alignment:
Q  289 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatgga---------agctcaaaattcatcacatcattacttggaagctcgttc 379  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||  ||||         |  ||||||||| || |||||| ||||||||||||||||    
T  27781195 atcatcacttggaagcttgttcaaatcaaaattcttcacatcatcaattggatactcgttcaaatcaaaattcttcgcatcatcacttggaagctcgttc 27781096  T
Q  380 aaatcaaaattcttca 395  Q
    ||||||||||||||||    
T  27781095 aaatcaaaattcttca 27781080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 38226992 - 38227042
Alignment:
Q  359 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccct 409  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  38226992 tcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccct 38227042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 38227135 - 38227197
Alignment:
Q  358 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||    
T  38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttc 38227197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 17663642 - 17663585
Alignment:
Q  265 acactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 322  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  17663642 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattc 17663585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 38227063 - 38227115
Alignment:
Q  358 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgacccta 410  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  38227063 atcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgacccta 38227115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 38227213 - 38227269
Alignment:
Q  364 acttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  38227213 acttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttc 38227269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 21899127 - 21899187
Alignment:
Q  262 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 322  Q
    ||||||||||||||||||||||||| |||| ||||||| || ||| |||||||| ||||||    
T  21899127 gagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattc 21899187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 17663843 - 17663772
Alignment:
Q  50 tcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatat 121  Q
    |||| |||||||||  ||||||||||||||||   |||||||||||||||| || ||||| |||||||||||    
T  17663843 tcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgaaaatctaaaatttatatatat 17663772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 17663618 - 17663556
Alignment:
Q  358 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||| |||||||||||| ||||||||||||||| | |||||| ||||||||| ||| |||||    
T  17663618 atcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattcggtttc 17663556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 17700337 - 17700387
Alignment:
Q  265 acactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatc 315  Q
    |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||    
T  17700337 acactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatc 17700387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 21898914 - 21898997
Alignment:
Q  49 ttcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaa 133  Q
    ||||| |||||||||  ||||||||||||||||   ||||||||||||||||| ||| ||| |||||||| ||| ||| ||||||    
T  21898914 ttcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgat-aaccaaaatttatataaatcgtgtcagcaaa 21898997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 27781439 - 27781396
Alignment:
Q  121 tcttgtaagcaaattgcttaataactcatgatgatatgctttaa 164  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||    
T  27781439 tcttgtaagcaaattgctcaataattcatgatgatatactttaa 27781396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 38227049 - 38227104
Alignment:
Q  275 gtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatc 330  Q
    |||||| |||||  ||||||||||||||  ||||||||||| ||||||||||||||    
T  38227049 gtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatc 38227104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 17700361 - 17700423
Alignment:
Q  358 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||| |||||||||||| |||||||||| |||| | |||||| ||||||||| ||| |||||    
T  17700361 atcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattcggtttc 17700423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 21079047 - 21079010
Alignment:
Q  366 ttggaagctcgttcaaatcaaaattcttcacaactttt 403  Q
    |||||||||||||||||||||||||| | |||||||||    
T  21079047 ttggaagctcgttcaaatcaaaattcctaacaactttt 21079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 50 - 328
Target Start/End: Original strand, 35249931 - 35250217
Alignment:
Q  50 tcactcaaacaaaacaagaagattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaattgcttaataactcat 149  Q
    ||||||||||||||  |||||| ||||||||| |||||||||   ||||||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||    
T  35249931 tcactcaaacaaaattagaagactaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgtaagcaaattgctcaataattcat 35250030  T
Q  150 gatgatatgctttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcaaaatatcattcaaaatca 249  Q
    ||||||||  ||||||||||  | ||   ||||| ||||||||||||| |||||||||||||||||||||| ||||||  || |||||||||||||||||    
T  35250031 gatgatat--tttaactaaacaacttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatca 35250128  T
Q  250 t----------taaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 328  Q
    |          ||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  35250129 ttaaaaagatataaaccaagacgagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcaca 35250217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 35250178 - 35250228
Alignment:
Q  358 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccc 408  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  35250178 atcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgaccc 35250228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 51220007 - 51220067
Alignment:
Q  262 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 322  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| ||||||    
T  51220007 gagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattc 51220067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 51220795 - 51220854
Alignment:
Q  263 agacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 322  Q
    |||||||| ||||||||||||||| || |||||||||||| ||||||||| || ||||||    
T  51220795 agacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattc 51220854  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 51220034 - 51220096
Alignment:
Q  358 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    ||||| |||||||||||| ||| ||||||||||| | |||||| ||||||||| ||| |||||    
T  51220034 atcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttc 51220096  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 51220827 - 51220883
Alignment:
Q  364 acttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttc 420  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||| ||| |||||    
T  51220827 acttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttc 51220883  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 440901 - 440967
Alignment:
Q  262 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 328  Q
    |||||||||||| |||||||||||| | ||||||||||||| |||||||||||| ||||||||||||    
T  440901 gagacactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcaca 440967  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 440929 - 440980
Alignment:
Q  359 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgacccta 410  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  440929 tcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggcccta 440980  T

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