View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_high_32 (Length: 409)

Name: NF11851_high_32
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_high_32
NF11851_high_32
[»] chr8 (8 HSPs)
chr8 (1-220)||(32627404-32627623)
chr8 (285-409)||(32627687-32627811)
chr8 (12-218)||(32708996-32709202)
chr8 (285-379)||(32709625-32709719)
chr8 (305-376)||(32703931-32704002)
chr8 (45-204)||(7292554-7292713)
chr8 (35-201)||(7297579-7297745)
chr8 (288-376)||(7297849-7297937)
[»] chr4 (2 HSPs)
chr4 (19-195)||(5811047-5811223)
chr4 (285-406)||(5811332-5811453)
[»] chr6 (4 HSPs)
chr6 (8-205)||(21943144-21943341)
chr6 (18-220)||(20116529-20116731)
chr6 (285-402)||(20116007-20116124)
chr6 (285-404)||(21943547-21943666)
[»] chr3 (2 HSPs)
chr3 (1-210)||(27736302-27736511)
chr3 (285-379)||(27736651-27736745)
[»] chr5 (1 HSPs)
chr5 (50-211)||(8030369-8030530)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32627404 - 32627623
Alignment:
Q  1 tgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627404 tgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc 32627503  T
Q  101 tatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627504 tatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaa 32627603  T
Q  201 ttaataaccaatcaacaaaa 220  Q
    ||||| ||||||||||||||    
T  32627604 ttaatcaccaatcaacaaaa 32627623  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 285 - 409
Target Start/End: Original strand, 32627687 - 32627811
Alignment:
Q  285 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  32627687 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgaagaggaaaaattctaccatgaaaggaaccaggaactcctgaga 32627786  T
Q  385 agaagcatggacccatttcagtccc 409  Q
    |||||||||||||||||||||||||    
T  32627787 agaagcatggacccatttcagtccc 32627811  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 32708996 - 32709202
Alignment:
Q  12 ttgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaatt 111  Q
    ||||| ||||||||||||| |||||||| |||||||| ||| |||||||||| ||| |  ||||||||||||||||||||||| |||||  |||| ||||    
T  32708996 ttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatcactttgaaatt 32709095  T
Q  112 gcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaa 211  Q
    | |||||||| ||  | |  |||||  |||||||||| |  |  || |||||||||||||| |||||||   ||  ||| ||||||||| |||| |||||    
T  32709096 ggttgtagtacgcagtaagtacatttgaggggcttgtacgagccatgtaaatgttgcccttattgttgttcacattctccggaacctaaataatcaccaa 32709195  T
Q  212 tcaacaa 218  Q
    |||||||    
T  32709196 tcaacaa 32709202  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 32709625 - 32709719
Alignment:
Q  285 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcc 379  Q
    ||||||||||||| |||   |||||| ||||||||||| ||||||||||||||||||  ||||||||| || ||||| || ||||||||||||||    
T  32709625 caaaccttagatagccacataaggctgtaagaggaatggacaaaatgcaaactttgattaggaaaaatcctgccatagaaagaaccaggaactcc 32709719  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 32703931 - 32704002
Alignment:
Q  305 aaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaac 376  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||| || ||||| |||||||| |||||    
T  32703931 aaggctataagaggaatgaacaaaatgcaaacttttattaggaaaaatcctgccatagaaggaaccgggaac 32704002  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 7292554 - 7292713
Alignment:
Q  45 atgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggc 144  Q
    |||| |||||||||||| | ||| |  || ||||||||||||||||  || || ||| |||| ||||||| |||||||||||||||||||||  |||| |    
T  7292554 atgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggac 7292653  T
Q  145 ttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaa 204  Q
    |||||  |   || |||||||| ||||| ||||| |||  ||| || |||||||||||||    
T  7292654 ttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaattaa 7292713  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 7297579 - 7297745
Alignment:
Q  35 tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgaca 134  Q
    ||||| || |||||||||||||||||||| ||| || |||||||||||||||||||  ||||| ||| |||  ||||| |  ||||| || ||||| |||    
T  7297579 tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaaca 7297678  T
Q  135 ttcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaat 201  Q
    ||  |||| ||||||  |   || |||||||||| ||| ||||| |||  |||||| ||||||||||    
T  7297679 tttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat 7297745  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 7297849 - 7297937
Alignment:
Q  288 accttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaac 376  Q
    ||||| |||| ||| |||||||| | |||||||||||  ||||| |||||| ||  |||||||| ||||| ||| || |||||||||||    
T  7297849 acctttgatagccactgaaggctgtgagaggaatgaatgaaatgtaaacttcgattaggaaaaactctactatagaaagaaccaggaac 7297937  T

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Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 5811047 - 5811223
Alignment:
Q  19 tttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgta 118  Q
    |||||| ||||| |||||||| |||||||  ||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||||    
T  5811047 tttttcgtcctaaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattgcttgta 5811146  T
Q  119 gtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaa 195  Q
    ||||||||||  ||||||  ||||||||||||| |  |  |||||||||||||||||||||||| || |||||||||    
T  5811147 gtaagccttgtggacatttgaggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaa 5811223  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 5811332 - 5811453
Alignment:
Q  285 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 384  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||| |   ||||| || |||| ||||||||| |||||||| || ||||    
T  5811332 caaaccttagataaccattgaagactgtaagaagaatgcacaaaatgcaaacttttatctggaaagatcctactataaaaggatccaggaacaccagaga 5811431  T
Q  385 agaagcatggacccatttcagt 406  Q
    || |||| ||||||||||||||    
T  5811432 agtagcaaggacccatttcagt 5811453  T

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Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 21943144 - 21943341
Alignment:
Q  8 tggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttgg 107  Q
    ||||||||||| || |||| ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||| | ||     
T  21943144 tggattgtcgcattctcttactaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatga 21943243  T
Q  108 aattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaat 205  Q
    |||||||  ||||||||||||| ||||||  ||||||||||| | |  |  |||||||||||||| ||||||||| |||||| ||| ||||| |||||    
T  21943244 aattgctcatagtaagccttgaagacatttgaggggcttgtggtcgccaagtaaatgttgcccttattgttgtctacacccttagggacctatttaat 21943341  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 20116731 - 20116529
Alignment:
Q  18 ctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgt 117  Q
    |||| |||||||| |||||| | |||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||  | ||||| |  |    
T  20116731 ctttctcttcctataaatgtcagaatcatgcaacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatcaatacgaaattgttcat 20116632  T
Q  118 agtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaaca 217  Q
    | || ||||||| ||||||  | ||||||||| | | ||| ||||| ||||||||||||||||   |||| |  |||||||||||||| ||| ||| |||    
T  20116631 aatatgccttgaagacatttgatgggcttgtgttcgctatgtaaatattgcccttgttgttgttcacaccattgggaacctaattaatcaccgatcgaca 20116532  T
Q  218 aaa 220  Q
    |||    
T  20116531 aaa 20116529  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 20116124 - 20116007
Alignment:
Q  285 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 384  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| | |  ||| |||||||| |||||||||||||| ||||| || ||||    
T  20116124 caaaccttagataaccaatgaatgctatatgaggaatgaactaaatgtaaactctcattagggaaaattctgccataaaaggaaccgggaacaccagaga 20116025  T
Q  385 agaagcatggacccattt 402  Q
    || |||| ||||||||||    
T  20116024 agtagcaaggacccattt 20116007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 404
Target Start/End: Original strand, 21943547 - 21943666
Alignment:
Q  285 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 384  Q
    ||||||||||| | ||||||||| ||  |||||| ||||| |||||||||||||||   |||||||||||| |||||||||||||| ||||| ||  |||    
T  21943547 caaaccttagagagccaatgaagactgcaagaggcatgaataaaatgcaaactttggtaaggaaaaattctgccataaaaggaaccgggaacaccaaaga 21943646  T
Q  385 agaagcatggacccatttca 404  Q
    || |||| ||||| ||||||    
T  21943647 agtagcaaggaccaatttca 21943666  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 27736302 - 27736511
Alignment:
Q  1 tgcttgttggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatc 100  Q
    |||||| ||||||||||| ||| ||||||| || ||||| ||||||   | | |||||||||| ||||| |||||||||    ||||||| |||||||||    
T  27736302 tgcttgatggattgtcgcatttccttcctaaaagtgttagaatcatttgagctccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatc 27736401  T
Q  101 tatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaa 200  Q
    | || | |||||||||||||||||||||| ||| ||  ||||||||||||| |  |  |||||||| |||||||||||||| |||||||| |||||||||    
T  27736402 tgttcgaaattgcttgtagtaagccttgatgacgtttgaggggcttgtgctcgtcaggtaaatgtttcccttgttgttgtcagcaccctctggaacctaa 27736501  T
Q  201 ttaataacca 210  Q
    | ||| ||||    
T  27736502 tgaatcacca 27736511  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 379
Target Start/End: Original strand, 27736651 - 27736745
Alignment:
Q  285 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcc 379  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| | |   ||||||||||| |||||||| ||||||||||||||    
T  27736651 caaaccttagatagccattgaagactatacgaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaactcc 27736745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 8030530 - 8030369
Alignment:
Q  50 acccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtg 149  Q
    |||||| ||||| | |||||| ||||||||||||||||| |  ||||||||| |||| |||||||  | |||||| ||||  || ||   ||||||||||    
T  8030530 acccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatctctttgaaattgctcatggtaagcgttgagcacgtttgcggggcttgtg 8030431  T
Q  150 ctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaa 211  Q
     | |  || |||||||| ||||| || || ||| |||| | |||||||||| |||| |||||    
T  8030430 gtagccatgtaaatgttacccttattattctctacacctttaggaacctaagtaatcaccaa 8030369  T

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