View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_33 (Length: 408)
Name: NF11851_high_33
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 53397420 - 53397146
Alignment:
| Q |
10 |
gacatcaaccaaaggcaaacttagattaagaaaaattagttagttggaattaataaacacattacatcaatcacagtacatgacgaactcataacaatgc |
109 |
Q |
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| T |
53397420 |
gacaccaacctaaggcaaacttagattaagaaaaattagttagttggaattaataaacacattacatcaatcacagtacatgacgaactcataacaatgc |
53397321 |
T |
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| Q |
110 |
tagaaaaaccgtttccatctacctaaccaacgtaactattaattttattactacgtaatctgcactgcacaacaattgcaaatctgagtcactacaatta |
209 |
Q |
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| T |
53397320 |
tagaaaaaccgtttccatctacctaaccaacgtaactattaattttattactacgtaatctgcactgcacaacaattgcaaatctgagtcactacaatta |
53397221 |
T |
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| Q |
210 |
gagcatcagcatccaaagataactgtccagttttttggatatatatataagtgagctccacacacattatacatta |
285 |
Q |
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| T |
53397220 |
gagcatcagcatccaaagataactgtccagtttttttg-gatatatataagtgagctccacacacattatacatta |
53397146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 53396875 - 53396834
Alignment:
| Q |
293 |
tcgttatagccatctatagaagcctcaaaatagattagcttg |
334 |
Q |
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| T |
53396875 |
tcgttatagccatctatagaagcctcaaaatagattagcttg |
53396834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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