View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_36 (Length: 395)
Name: NF11851_high_36
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 47316217 - 47315850
Alignment:
| Q |
10 |
gtgagatgaagaggagcaagaggtgcacccaaaacactaagcagcaacctcaaatcagaagatgaggaaacaccgaagctacattctgtttcctctggtc |
109 |
Q |
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| T |
47316217 |
gtgacatgaagaggagcaagaggtgcacccaaaacactaagcagcaacctcaaatcagaagatgaggaaacaccgaagctacattctgtttcctctggtc |
47316118 |
T |
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| Q |
110 |
cctccctcaacggcgacattgcttccaacggtggcctcaccggagtagaagggcatattcctccaacaaacaactcaagtggaagaacatcctctttctt |
209 |
Q |
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| T |
47316117 |
cctccctcaacggcgacattgcttccaacggtggcctcaccggagtagaagggcatattcctccaacaaacaactcaagtggaagaacatcctctttctt |
47316018 |
T |
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| Q |
210 |
cttccgctggagtaaacttgacatcggagaactactgctcgccggcgacatccctctcattaagtcctctttcaacccccaaaacaagccttgtttcttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47316017 |
cttccgctggagtaaacttgacatcggagaactactgctcgccggcgacatccctctcattaagtcctctttcaacccccaaaacaagccttgtttcttc |
47315918 |
T |
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| Q |
310 |
tccatagttaacctaagagtgttgaaaaagtaggaacaggaagagatagtaaccacaacaaccacaaag |
378 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47315917 |
tccatagttaacct-agagtgttgaaaaagtaggaacaggaagagatagtaaccacaacaaccacaaag |
47315850 |
T |
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