View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_high_4 (Length: 757)
Name: NF11851_high_4
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_4 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Original strand, 3957242 - 3957872
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttctgttgctcaacaattcaaggaaaacaa-gaaaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3957242 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttctgttgctcaacaattcaaggaaaacaaagaaaagg |
3957341 |
T |
|
| Q |
118 |
attgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacattcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957342 |
attgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacattcag |
3957441 |
T |
|
| Q |
218 |
cggcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957442 |
cggcactgttacatcatgctaaaagcaatgaaagcaatgctgattacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgt |
3957541 |
T |
|
| Q |
318 |
tccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatc |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3957542 |
tccagagtggttcaagtacaggacagcacaggatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgctccatc |
3957641 |
T |
|
| Q |
418 |
cttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957642 |
cttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgt |
3957741 |
T |
|
| Q |
518 |
ataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtt |
617 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957742 |
ataggtattttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcacgctacctaactagcatagcaaaaaagcagacaaggtt |
3957841 |
T |
|
| Q |
618 |
taaaatcaaggttacagcaaggacaacaccc |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3957842 |
taaaatcaaggttacagcaaggacaacaccc |
3957872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 642
Target Start/End: Complemental strand, 4023450 - 4022830
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaagaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
4023450 |
cttccttcatcagttgaaactctacttgttgaatgtagatcactgaagactgtattgttcccttcaacagtttctgaacaattcaaggaaaacaagaaaa |
4023351 |
T |
|
| Q |
116 |
ggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacattc |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| || |||||||| |||||| |||||| ||||| |
|
|
| T |
4023350 |
ggattgagttctggaattgctggaacttggatgaacattctctcataaatattgggttgaatctgcaaatgaatttgataaagtttacatatcaacattt |
4023251 |
T |
|
| Q |
216 |
agcggcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagt |
315 |
Q |
| |
|
| || ||||| |||| || | |||||| |||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4023250 |
atcgacactggaacatgat------cacgttgaaagttatgttgattacaaagataactttgattcttatcaagcagtgtatgtttatcctggaagtagt |
4023157 |
T |
|
| Q |
316 |
gttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttca |
415 |
Q |
| |
|
||||||||||||| ||||||| |||| || | ||||| |||||| ||||||||||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
4023156 |
attccagagtggttggagtacaagacaacaaaggatgacatgattgttgatctctctccacattatctctcccctttgctgggctttgttttttgctttg |
4023057 |
T |
|
| Q |
416 |
tccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcat |
515 |
Q |
| |
|
||||||| |||||| ||| | |||| ||| |||||||||||| |||||||||| ||||| || | ||| || ||||||| ||| |||| ||| | ||| |
|
|
| T |
4023056 |
tccttgctaaggacatccattattgtgaccgaattgaattgaacatcactacaaatgatgctgaaggtgacgatgaaaagggtggcgtcaatatatacat |
4022957 |
T |
|
| Q |
516 |
gtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaagg |
615 |
Q |
| |
|
| |||| | | || || | ||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||| || ||| |||| |
|
|
| T |
4022956 |
ggatagaacacgtctcggtattgcatcagatcatgtgtgcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataagagaagg |
4022857 |
T |
|
| Q |
616 |
tttaaaatcaaggttacagcaaggaca |
642 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
4022856 |
tttaaaatcaaggttacggcaaggaca |
4022830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 643
Target Start/End: Complemental strand, 3985374 - 3984753
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaagaaaa |
115 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
3985374 |
cttccatcatcacttgaaactctacttgttgactgtgtgtcactgaagtctgtatttttcccttcaacagttgctgaacaattaaaggaaaacaagaaaa |
3985275 |
T |
|
| Q |
116 |
ggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacattc |
215 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||| | || |||||||||||| |||||||||||| ||||| |
|
|
| T |
3985274 |
ggattgagttctggaattgcttcaaattggatgaacgttctctcataaatattgggttgaatcttcaaatcaatttgatggagtttgcatatcaacattt |
3985175 |
T |
|
| Q |
216 |
agcggcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagt |
315 |
Q |
| |
|
| || ||||| |||| || |||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
3985174 |
atcgacactggaacatgat----aaag--ttgaaagctatgttgattacaaagatatccttgattcttatcaagcagtgtatgtatatcctggaagtagt |
3985081 |
T |
|
| Q |
316 |
gttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttca |
415 |
Q |
| |
|
|||||||||||||| ||||||| |||| || | ||||||||||| |||||||||| || | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
3985080 |
gttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctcaccacctcatctctcccctttgttgggctttgttttctgcttca |
3984981 |
T |
|
| Q |
416 |
tccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcat |
515 |
Q |
| |
|
|||||||| |||||||| ||| ||| || || ||||| || ||| ||||| |||||| || || ||| | ||||| ||||||||| ||||| ||| |
|
|
| T |
3984980 |
tccttgccgaggactccaaatattgcgacattatggaatttaacatctctacatttgatggtgagggtgacggtgaaaaagatggtgtcgatatctacat |
3984881 |
T |
|
| Q |
516 |
gtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaagg |
615 |
Q |
| |
|
||||||| | | || || || | | ||||||||| |||||||||||||||| ||||||||| | ||||||||| |||||||| |||| |||||| | |
|
|
| T |
3984880 |
gtataggacatgttgctatactgaattagatcatgtgtgcatgatatacgaccaaccatgttctcactacctaaccagcatagccaaaagtcagacacag |
3984781 |
T |
|
| Q |
616 |
tttaaaatcaaggttacagcaaggacaa |
643 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3984780 |
gttaaaatcaaggttacagcaaggacaa |
3984753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 3921781 - 3922185
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaa---tgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaaga |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
3921781 |
cttccttcatcagttgaaagtctacttgttgacaactgtgaatcactaaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaaga |
3921880 |
T |
|
| Q |
113 |
aaaggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgaca |
212 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||| || ||| ||| |
|
|
| T |
3921881 |
aaagggttgagttctggaattgcttcaacttggatgaactttctctgataaatattgggttgaatctgcaaatcaatttgatgaagtttacacatcaaca |
3921980 |
T |
|
| Q |
213 |
ttcagcggcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagt |
312 |
Q |
| |
|
|| | | ||||| |||| ||| | | || |||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3921981 |
tttatcaacactggaacatgatg-aatatgc--tgaaagttatgttgattacaaagataactttgattcttatcaagcagtgtatgtgtatcctggaagt |
3922077 |
T |
|
| Q |
313 |
agtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgct |
412 |
Q |
| |
|
||||||||| ||||||| ||||||| |||| || |||| |||||| ||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
3922078 |
agtgttccaaagtggttggagtacaagacaacaatggatggcatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgct |
3922177 |
T |
|
| Q |
413 |
tcatcctt |
420 |
Q |
| |
|
| |||||| |
|
|
| T |
3922178 |
ttatcctt |
3922185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 19 - 642
Target Start/End: Complemental strand, 4008292 - 4007672
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttccctt---ctgttgctcaacaattcaaggaaaacaagaaaa |
115 |
Q |
| |
|
||||| |||||| ||||||||||| | | ||||||||||||| |||||||||||| ||||||| | | | || |||| ||||||||||||||||||| |
|
|
| T |
4008292 |
cttccatcatcacttgaaactctattggctgaatgtgaatcactgaagactgtatggttccctttaacagcttctgaacagttcaaggaaaacaagaaaa |
4008193 |
T |
|
| Q |
116 |
ggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacattc |
215 |
Q |
| |
|
|| || ||| |||||||| |||||| ||||| || | ||||| |||||||||| ||||||| | || |||||| | |||||||||||||||| ||||| |
|
|
| T |
4008192 |
gggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataatgaagtttgcatatcaacattt |
4008093 |
T |
|
| Q |
216 |
agcggcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagt |
315 |
Q |
| |
|
| || ||||| |||| | ||| |||||| ||||||| ||||||| | | |||| ||||||||||||| | ||| ||||||| ||||||| |
|
|
| T |
4008092 |
atcgacactggaacataa--ctatgt----tgaaagtaatgttgattacaaacaaacgtttggttcttatcaagcattttatgtgtatccaggaagtacc |
4007999 |
T |
|
| Q |
316 |
gttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttca |
415 |
Q |
| |
|
||||| |||||||| | ||||| ||| |||| |||||||||||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
4007998 |
gttcctgagtggttggcgtacaaaacaacacaggatgatatgattgttgatctctttccaaatcatctcccccctttgttgggctttgttttttgcttca |
4007899 |
T |
|
| Q |
416 |
tccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcat |
515 |
Q |
| |
|
||||||| |||| | |||| |||| | |||||||| || || |||| ||||||||||| ||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
4007898 |
tccttgctgaggattaccaacattgtgaacaaattgagttcaacatcagtacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacat |
4007799 |
T |
|
| Q |
516 |
gtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaagg |
615 |
Q |
| |
|
| ||||| | | || || | ||||||||||| ||||||||| |||||| || |||||| || ||||||||||| ||||||| || || |||||| |
|
|
| T |
4007798 |
gaataggacacctctcggtattgcatcagatcatgtgtgcatgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaagg |
4007699 |
T |
|
| Q |
616 |
tttaaaatcaaggttacagcaaggaca |
642 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4007698 |
tttaaaatcaaggttacagcaaggaca |
4007672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 23 - 420
Target Start/End: Original strand, 3935136 - 3935545
Alignment:
| Q |
23 |
cttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaagaaaaggat |
119 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||| ||| ||||| ||||||| |||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
3935136 |
cttcatcagttgaaattctacttgttcactgtgactcactgaagtctgtattgttcccttcaacagttgctgaacaattcaaggaaaacaagaaagaagt |
3935235 |
T |
|
| Q |
120 |
tgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacattcagcg |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| | ||| | | |
|
|
| T |
3935236 |
taagttctggaattgcttgaacttggatgagcgttctctgataaatattgggttgaatctgcaaatcaatttgatgaagtttgcatatcaagatttatca |
3935335 |
T |
|
| Q |
220 |
gcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttc |
319 |
Q |
| |
|
|| || |||| ||| | | ||||| |||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
3935336 |
acagtggaacatgatgatta---tgttgaaacttatgttgattacaaagataactttgattcttatcaagcattgtatgtgtattctggaagtagtgttc |
3935432 |
T |
|
| Q |
320 |
cagagtggttcgagtaca------------ggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgtttt |
407 |
Q |
| |
|
|||| ||||| ||||||| |||| || | ||||| |||||| ||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
3935433 |
cagattggtttgagtacaagacaacaaacgagacaacaaacgatgacatgattgttgatctctctccacttcatctctcccctttgttgggttttgtttt |
3935532 |
T |
|
| Q |
408 |
ttgcttcatcctt |
420 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
3935533 |
ttgctttatcctt |
3935545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 646 - 750
Target Start/End: Original strand, 3959176 - 3959280
Alignment:
| Q |
646 |
cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3959176 |
cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat |
3959275 |
T |
|
| Q |
746 |
ctgtg |
750 |
Q |
| |
|
||||| |
|
|
| T |
3959276 |
ctgtg |
3959280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 4000534 - 4000336
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttctg---ttgctcaacaattcaaggaaaacaagaaaa |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| || || |||||||||||||||||||||||| |
|
|
| T |
4000534 |
cttcctttatcagttgaaactctacttgttgaatgtatatcactgaagactgtattgttcccttcaacaatttctgaacaattcaaggaaaacaagaaaa |
4000435 |
T |
|
| Q |
116 |
ggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacatt |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||| || | |||||| | || ||||||||||||| ||||| |
|
|
| T |
4000434 |
ggattgagttctggaattgcttcaacttggatgaacattctctcgtaaatattgggttcaatatgaaaatcaatctaatcaagtttgcatatcaacatt |
4000336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 315 - 643
Target Start/End: Complemental strand, 4000202 - 3999874
Alignment:
| Q |
315 |
tgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttc |
414 |
Q |
| |
|
||||| ||||||||| ||||||| |||| || | ||||| |||||| || || ||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
4000202 |
tgttcgagagtggttggagtacaagacaacagaggatgacatgattgttaatatctctccacttcatctctcctctttgttgggctttgttttttgcttt |
4000103 |
T |
|
| Q |
415 |
atccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttca |
514 |
Q |
| |
|
||||||| |||| |||| | | ||||||| |||||| |||||| |||||| |||||||||||| || ||||| ||||||||||||||| ||| | || |
|
|
| T |
4000102 |
gtccttgctaaggtctccaattattgttacaaaattgtattgaacatcactgcaattgatgttgagggtgatggtgaaaaggatggtgtcgatatataca |
4000003 |
T |
|
| Q |
515 |
tgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaag |
614 |
Q |
| |
|
|| || | | | | | || | |||||||||||| || ||||||||||||||||||| ||| | ||||||||||| ||||| ||||| || ||||| |
|
|
| T |
4000002 |
tggatgtggatcgtgtttgtaataattcagatcatgtgtgtatgatatacgacccaccattttctcagtacctaactagaatagcgaaaaatcatacaag |
3999903 |
T |
|
| Q |
615 |
gtttaaaatcaaggttacagcaaggacaa |
643 |
Q |
| |
|
||| |||||||||||| |||||||||||| |
|
|
| T |
3999902 |
gttcaaaatcaaggttgcagcaaggacaa |
3999874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 3815991 - 3815805
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaa---tgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | | ||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
3815991 |
cttccttcatcagttgaaactctacttgttaaagattctttttcactgaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaaga |
3815892 |
T |
|
| Q |
113 |
aaaggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagt |
199 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
3815891 |
aaagtgttgagttctggaattgcgagaacttggatgaaagttctctcataaatgttgggttgaatgttcaaatcaatttaatgaagt |
3815805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 3808417 - 3808231
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgtt-gaa--tgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||| |||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
3808417 |
cttccttcatcagttgaaactctacttgttagcagctgtagatcactgaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaaga |
3808318 |
T |
|
| Q |
113 |
aaaggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagt |
199 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||| | |||||||||||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
3808317 |
aaagtgttgagttctggcattgcaagaacttggatgaaagttctctcataaatgttgggttgaatgttcaaatcaatttaatgaagt |
3808231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 404 - 642
Target Start/End: Complemental strand, 3998919 - 3998681
Alignment:
| Q |
404 |
ttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgt |
503 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||| |||||||| || || |||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
3998919 |
ttttttgcttcatccttgctgaggactaccaacattgtgcacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggacggtgt |
3998820 |
T |
|
| Q |
504 |
cagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaa |
603 |
Q |
| |
|
|||||| | |||| ||||| | | || || | ||||||||||| ||||||||| || ||| || |||||| || ||||||||||| ||||||| |
|
|
| T |
3998819 |
cagtatttacatgaataggacacctctcagtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaag |
3998720 |
T |
|
| Q |
604 |
aagcagacaaggtttaaaatcaaggttacagcaaggaca |
642 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
3998719 |
aatcatacaaggtttaaaattaaggttacagcaaggaca |
3998681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 274 - 413
Target Start/End: Complemental strand, 3808222 - 3808083
Alignment:
| Q |
274 |
tttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctc |
373 |
Q |
| |
|
|||| |||| || ||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| |||| || | ||||| | |||| |||||||||||| |
|
|
| T |
3808222 |
tttggttctgatgaagcaatgtatgtgtatcctggaagtaatgttccagagtggtttgagtacaagacaacaaaggatgacaagattgttgatctctctc |
3808123 |
T |
|
| Q |
374 |
cttttttcctctcccctttgttgggctttgttttttgctt |
413 |
Q |
| |
|
| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
3808122 |
cacctcacctctcccccttgttgggctttgttttttgctt |
3808083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 3936839 - 3936950
Alignment:
| Q |
85 |
gttgctcaacaattcaaggaaaacaagaaaaggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcaga |
184 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||| |||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||| || | |
|
|
| T |
3936839 |
gttgctgaacaattaaaggaaaacaa-aaaagagttgagttctggaattgctggaacttgattaaatgttctctcataaatattgggttgaatgttcaaa |
3936937 |
T |
|
| Q |
185 |
tcaatttgatgaa |
197 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
3936938 |
tcaatttaatgaa |
3936950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 3815796 - 3815697
Alignment:
| Q |
274 |
tttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctc |
373 |
Q |
| |
|
|||| |||| || ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||| |||| || | ||||||||||||||||||||||||| |
|
|
| T |
3815796 |
tttggttctgatgaagcaatgtatgtgtatcctggaagtagtattccagagtggttggagtacaagacaacaaaggatgatatgattattgatctctctc |
3815697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 3800230 - 3800046
Alignment:
| Q |
33 |
tgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaagaaaaggattgagttctgg |
129 |
Q |
| |
|
|||||||||||||||| | | | | ||| |||| ||||||| |||||||| |||||| |||||| |||||||||||||||| |||| | || ||| |
|
|
| T |
3800230 |
tgaaactctacttgttcactataagtcactgaatgctgtattgttcccttcaacagttgctggacaattaaaggaaaacaagaaaatgattaacttttgg |
3800131 |
T |
|
| Q |
130 |
aattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaagtttgcatatcgacatt |
214 |
Q |
| |
|
|||||||||||||| || ||| ||||||||| ||| | |||||||| | ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
3800130 |
aattgcttgaactttgaagaactttctctcatacataattggttgaatctacagattaatttgatgaagtttgcatatcaacatt |
3800046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 543 - 637
Target Start/End: Complemental strand, 3815533 - 3815439
Alignment:
| Q |
543 |
agatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaa |
637 |
Q |
| |
|
||||||||||||||||||| | |||| || |||||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
3815533 |
agatcatgtatgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa |
3815439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 541 - 648
Target Start/End: Original strand, 3922309 - 3922416
Alignment:
| Q |
541 |
tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagga |
640 |
Q |
| |
|
||||||||||| || ||||| ||||||| ||| ||||| | |||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| |
|
|
| T |
3922309 |
tcagatcatgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatgga |
3922408 |
T |
|
| Q |
641 |
caacaccc |
648 |
Q |
| |
|
||| |||| |
|
|
| T |
3922409 |
caataccc |
3922416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 541 - 639
Target Start/End: Original strand, 3935669 - 3935767
Alignment:
| Q |
541 |
tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg |
639 |
Q |
| |
|
||||||||||| || ||||| ||||||| ||| || || | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3935669 |
tcagatcatgtgtgtatgatttacgaccaaccttgctctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaagg |
3935767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 3999063 - 3998935
Alignment:
| Q |
246 |
tgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagca |
345 |
Q |
| |
|
|||||| ||||||| ||||||| |||| |||| ||||||||||||| ||||| | ||||| ||||| |||||| |||||| ||| ||||||| ||| || |
|
|
| T |
3999063 |
tgaaagtaatgttgattacaaacataagtttggttcttatcaagcattgtatgtttatccaggaagcagtgtttcagagtcgttggagtacaaaacaaca |
3998964 |
T |
|
| Q |
346 |
catgatgatatgattattgatctctctcc |
374 |
Q |
| |
|
| ||||| | |||||||||| ||||||| |
|
|
| T |
3998963 |
aaggatgacaggattattgatatctctcc |
3998935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 4000274 - 4000210
Alignment:
| Q |
279 |
ttcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacag |
343 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
4000274 |
ttcttatcaagcattgtatgtatatcctggaagtagtgttccagagtggttggagtacaagacag |
4000210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 3800006 - 3799929
Alignment:
| Q |
265 |
aaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggaca |
342 |
Q |
| |
|
|||||| | |||| ||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
3800006 |
aaagattactttgcttcttatcaagcaccgtatgtttattctggaagtagtgttccatagtggttggagtacaagaca |
3799929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 4016681 - 4016597
Alignment:
| Q |
62 |
tgaagactgtatttttcccttctgttgctcaacaattcaaggaaaacaagaaaaggattgagttctggaattgcttgaacttgga |
146 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||||||||||| |||| ||||||| ||| ||| |||||||||||| ||||| |
|
|
| T |
4016681 |
tgaagactgtgttgttcccttcaattgctgaacaattcaaggagaacaggaaaagggttgtgtttgcgaattgcttgaaattgga |
4016597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 4216939 - 4216876
Alignment:
| Q |
279 |
ttcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggaca |
342 |
Q |
| |
|
||||||||||||| |||| | ||| ||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
4216939 |
ttcttatcaagcaccgtatgtttattctggaagtagtgttccatagtggttggagtacaagaca |
4216876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 639
Target Start/End: Complemental strand, 3807890 - 3807848
Alignment:
| Q |
597 |
agcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg |
639 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
3807890 |
agcaaaaaatcaggcaaggtttaaaatcaaggttacagtaagg |
3807848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 646 - 750
Target Start/End: Complemental strand, 19168021 - 19167917
Alignment:
| Q |
646 |
cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat |
745 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| || |
|
|
| T |
19168021 |
cccattgagttcttaatatgctaacactcttcattgcagcagtactaggattgtttacctgatcttcatatctagcaacatgggcaatagccgtgtcaat |
19167922 |
T |
|
| Q |
746 |
ctgtg |
750 |
Q |
| |
|
||||| |
|
|
| T |
19167921 |
ctgtg |
19167917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 13396220 - 13396086
Alignment:
| Q |
19 |
cttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttct---gttgctcaacaattcaaggaaaacaagaaaa |
115 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| | ||| ||||| ||||| | |||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
13396220 |
cttccttcatcacttgaaactctaattgttgaatgtaagtcactgaagtctgtagtgttcccttcaaaagttaccgaacaattcaaggaaaacaagaaaa |
13396121 |
T |
|
| Q |
116 |
ggattgagttctggaattgcttgaacttggatgaa |
150 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |
|
|
| T |
13396120 |
ggatagagttttggaattgcttgaacttggatgaa |
13396086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 646 - 701
Target Start/End: Complemental strand, 18761 - 18706
Alignment:
| Q |
646 |
cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgttt |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
18761 |
cccattgagttcttaatatgcttacactcttcattgaagcagtactaggattgttt |
18706 |
T |
|
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